A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

ACCESS - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
ACCESS_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
ACCESS_PAGE_AUTHSYS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
ACCESS_PAGE_GROUP - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
ACCESS_PAGE_USER - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
AFTER - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
 
AFTER - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
 
ALERT_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
General alert text (eg shown in data view if data file not readable)
AND - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
ASCENDING - Static variable in class edu.ucsb.nceas.morpho.util.SortableJTable
 
ATTRIBUTE_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
ATTRIB_NAME_FOR_SCHEMA_LOCATION - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used by the transform() method to get the schemaLocation (if one has been defined) from the Document root node
ATTR_DIALOG_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
AbstractCellEditor - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor.
 
AbstractCellEditor() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
AbstractCustomTablePopupHandler - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.AbstractCustomTablePopupHandler.
Class AbstractCustomTablePopupHandler This class is an abstract class that acts as a dialog and a CustomTablePopupListener
AbstractCustomTablePopupHandler() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.AbstractCustomTablePopupHandler
 
AbstractDataPackage - class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage.
class that represents a data package.
AbstractDataPackage() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
AbstractTreeTableModel - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel.
An abstract implementation of the TreeTableModel interface, handling the list of listeners.
AbstractTreeTableModel(Object) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
AbstractUIPage - class edu.ucsb.nceas.morpho.framework.AbstractUIPage.
Class AbstractUIPage
AbstractUIPage() - Constructor for class edu.ucsb.nceas.morpho.framework.AbstractUIPage
 
Access - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access.
 
Access() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
AccessPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage.
 
AccessPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
AccessTreeCellRenderer - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeCellRenderer.
This class is a simple extension of the DefaultTreeCell Renderer that uses an ImageIcon stored in the NodeInfo UserObject of a tree node as the icon of a node when it is displayed in a tree.
AccessTreeCellRenderer() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeCellRenderer
Constructor
AccessTreeModel - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel.
FileSystemModel is a TreeTableModel representing a hierarchical file system.
AccessTreeModel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
AccessionNumber - class edu.ucsb.nceas.morpho.datapackage.AccessionNumber.
Class that implements Accession Number utility functions for morpho
AccessionNumber(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
 
AddAccessCommand - class edu.ucsb.nceas.morpho.datapackage.AddAccessCommand.
Class to handle add access command
AddAccessCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddAccessCommand
 
AddDocumentationCommand - class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand.
Class to handle add documentation command
AddDocumentationCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand
Constructor of refreshCommand There is no parameter, means it will refresh current active morpho frame
AddGeographicCovCommand - class edu.ucsb.nceas.morpho.datapackage.AddGeographicCovCommand.
Class to handle add geographic coverage command
AddGeographicCovCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddGeographicCovCommand
 
AddMethodCommand - class edu.ucsb.nceas.morpho.datapackage.AddMethodCommand.
Class to handle add method command
AddMethodCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddMethodCommand
 
AddResearchProjectCommand - class edu.ucsb.nceas.morpho.datapackage.AddResearchProjectCommand.
Class to handle add project command
AddResearchProjectCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddResearchProjectCommand
 
AddTaxonomicCovCommand - class edu.ucsb.nceas.morpho.datapackage.AddTaxonomicCovCommand.
Class to handle addition of taxonomic coverage to the data package
AddTaxonomicCovCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddTaxonomicCovCommand
 
AddTemporalCovCommand - class edu.ucsb.nceas.morpho.datapackage.AddTemporalCovCommand.
Class to handle add temporal coverage command
AddTemporalCovCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddTemporalCovCommand
 
AddUsageRightsCommand - class edu.ucsb.nceas.morpho.datapackage.AddUsageRightsCommand.
Class to handle add usage command
AddUsageRightsCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddUsageRightsCommand
 
Attribute - class edu.ucsb.nceas.morpho.datapackage.Attribute.
class that represents a Attribute
Attribute() - Constructor for class edu.ucsb.nceas.morpho.datapackage.Attribute
 
Attribute(OrderedMap) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Attribute
 
Attribute(Node, AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Attribute
 
AttributeDefinition_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
AttributeEditDialog - class edu.ucsb.nceas.morpho.editor.AttributeEditDialog.
This is a simple dialog which allows the viewing/editing of the attributes of an XML element as stored in the DocFrame JTree XML editor.
AttributeEditDialog(Frame) - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
AttributeEditDialog(Frame, String, DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
dialog is given a DefaultMutableTreeNode (nd) with the attribute data to be displayed
AttributeEditDialog() - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
AttributeEditDialog(String) - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
AttributeLabel_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
AttributeName_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
AttributePage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage.
 
AttributePage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
AttributeSettings - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings.
This class contains the absolute xPaths for the various Measurement scales of an Attribute.
AttributeSettings() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
Attribute_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
accessComboBox - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
accessIsAllow - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
accessTree - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
accessTreeMetacatServerName - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
accessTreeNode - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
action(Event, Object) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
the only action we handle is a in one of TextFields
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame
 
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
actionPerformed() method required by ActionListener interface
add(HistoryItem) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
add the String identifier to the most-recent slot in history
addAction - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
addActionListener(ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Register a java.awt.event.ActionListener to listen for events
addActionListener(ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Register a java.awt.event.ActionListener to listen for events
addAttributeForImport(String, String, String, OrderedMap, String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
addCellEditorListener(CellEditorListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
addChild(String, int, String, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Add a child node to the specified parent
addChild(QueryGroup) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Add a child QueryGroup to this QueryGroup
addChild(QueryTerm) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Add a child QueryTerm to this QueryGroup
addChildNode(BasicNode) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Add a child node to this node
addColumn() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
add a column after the last current column new column is filled with spaces
addColumnsToRowData(Vector, List) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
 
addConnectionListener(ConnectionListener) - Method in class edu.ucsb.nceas.morpho.Morpho
This method is called by plugins to register a listener for changes in the Connection status.
addEditingCompleteListener(EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Register an EditingCompleteListener to listen for editor events
addEditingCompleteListener(EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Register an EditingCompleteListener to listen for editor events
addElement(Serializable) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
addEntity(Entity) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method automatically adds an entity in the DOM at the next available position
addGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Add a GUIAction to the menu and toolbar for this frame.
addGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.UIController
Add a menu item and optionally a toolbar button by registering an instance of GUIAction.
addHiddenWindow(String) - Method in class edu.ucsb.nceas.morpho.framework.UIController
 
addLocation(String, String, double, double, double, double) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
adds a location to the config file
addMap() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
This method adds the (now) static map variable to its location in the center of the panel 'map' and 'img_0' have been made static so that they are shared between instances of the class to avoid the large amount of memory needed when large map images are used and there are multiple instances.
addNewObjectToCache(String) - Method in class edu.ucsb.nceas.morpho.util.ObjectCache
create a new object and add it to the cache Override this to put a new object in the cache if it is currently missing
addNewUnit(String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
addNotify() - Method in class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
addNotify() - Method in class edu.ucsb.nceas.morpho.framework.ConnectionFrame
Adjust the window size
addNotify() - Method in class edu.ucsb.nceas.morpho.framework.SplashFrame
Override addNotify -- vis cafe does this, but why?
addPopupListener(CustomTablePopupListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
addProfileAddedListener(ProfileAddedListener) - Method in class edu.ucsb.nceas.morpho.Morpho
Add a ProfileAddedListener to listen for new profile additions.
addReferencesListener(ReferencesListener) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
register a listener
addRow(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
add a row to the end of the data vec is assumed to be a Vector of strings
addRow(List) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
adds the row to the list after the currently-selected row, or at the end if no row is selected.
addService(Class, ServiceProvider) - Method in class edu.ucsb.nceas.morpho.plugins.ServiceController
This method is called by plugins to register a particular service that the plugin can perform.
addStateChangeListener(String, StateChangeListener) - Method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
This method is called by objects to register a listener for changes in the application state.
addTitledBorder(JComponent, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
addToPath(PathElementInterface) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
add a PathElement object to the path
addTransformerProperty(String, String) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
adds a name/value pair to the Properties object containing the properties to be set for the transformer
addTreeModelListener(TreeModelListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
addTriple(Triple) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
Add a single triple to this collection
addTriplesToTriplesFile(TripleCollection, DataPackage, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
method to add a collection of triples to a triples file.
addTriplesToTriplesString(TripleCollection, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
method to add a collection of triples to a triples string.
addVector(Vector) - Method in class edu.ucsb.nceas.morpho.query.SynchronizeVector
add a new vector to content.
addWindow(String) - Method in class edu.ucsb.nceas.morpho.framework.UIController
This method is called by plugins to get a new window that is an instance of MorphoFrame.
append(PathElementInterface) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
add the PathElement to the end of the path
appendAdditionalMetadata(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
applySelection(JTable, String[][]) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
ascending - Variable in class edu.ucsb.nceas.morpho.query.CellComparator
 

B

BACKBUTTON_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
BACKBUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
BACKGROUND_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
BASIC_UNIT_TYPES_XPATH - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
BEFORE - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
 
BEFORE - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
 
BLANK - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
BLANK_HTML_PAGE - Static variable in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
 
BORDERED_PANEL_TOT_ROWS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
BOTH - Static variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
used to signify that this package is stored on metacat and locally.
BOTH - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
used to signify that this package is stored on metacat and locally.
BOTTOMLINE_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
BUTTON_DISABLED_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
BUTTON_FONT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
BUTTON_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
BUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
BackCommand - class edu.ucsb.nceas.morpho.plugins.metadisplay.BackCommand.
 
Base64 - class edu.ucsb.nceas.morpho.util.Base64.
 
Base64() - Constructor for class edu.ucsb.nceas.morpho.util.Base64
 
BasicNode - class edu.ucsb.nceas.morpho.query.BasicNode.
A Class that represents an XML node and its contents
BasicNode() - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BasicNode(String) - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BasicNode(String, long, int) - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BasicNode(long, String, long, int) - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
ButterflyFlapCoordinator - interface edu.ucsb.nceas.morpho.framework.ButterflyFlapCoordinator.
Interface for coordinate butterfly flap
blankIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
the icon for blank, nothing there
broadcastStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Broadcast the stored StateChangeEvent
broadcastStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Broadcast the stored StateChangeEvent
broadcastStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Broadcast the stored StateChangeEvent
broadcastStoredStateChangeEvent() - Method in interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent
Broadcast the stored StateChangeEvent
buildTree(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.DTDTree
 

C

CANCEL_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
CANCEL_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
CANCEL_OPTION - Static variable in class edu.ucsb.nceas.morpho.framework.ModalDialog
 
CANCEL_OPTION - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
CHANGE_PROFILE_LABEL_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
CITATIONTYPE_ARTICLE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
CITATIONTYPE_BOOK - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
CITATIONTYPE_REPORT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
CITATION_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
CLIENT_SCREEN_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall screen height (in pixels)
CLIENT_SCREEN_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall screen width (in pixels)
CLIPBOARD_HAS_DATA_TO_PASTE - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the Paste command has data in the System clipboard to 'Paste'.
CLIPBOARD_HAS_NO_DATA_TO_PASTE - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the Paste command has no data in the System clipboard to 'Paste'.
CLOSEBUTTON_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
CLOSEBUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
CLOSED_OPTION - Static variable in class edu.ucsb.nceas.morpho.framework.ModalDialog
 
CLOSE_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
descriptive constant used in ActionEvents generated by the display Signifies that user has issued a command to close the display
CODE_DEFINITION - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
CODE_IMPORT_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
CODE_IMPORT_SUMMARY - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
COPYKEY - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
String for accelerator key
CREATEDATEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of createdate in resultsVector
CREATE_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING ONE OR MORE ENTITIES has been opened
CREATE_DATAPACKAGE_FRAME_NO_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, but that no previous versions of the selected package are available
CREATE_DATAPACKAGE_FRAME_SYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, and that the local and network versions of the package *are* in sync
CREATE_DATAPACKAGE_FRAME_UNSYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, and that the local and network versions of the package are *not* in sync
CREATE_DATAPACKAGE_FRAME_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, and that previous versions of the selected package *are* available
CREATE_EDITABLE_ENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING ONE OR MORE ASCII ENTITIES has been opened
CREATE_ENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING ENTITIES has been opened
CREATE_NOENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING NO ENTITIES OR ASCII DATA has been opened
CREATE_NONEDITABLE_ENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened CONTAINING ONE OR MORE ENTITIES THAT ARE NOT EDITABLE (e.g.
CREATE_SEARCH_RESULT_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a search result frame has been opened
CSS_PATH_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
xsl property used to hold path to css stylesheets
CURRENT_DATA_PACKAGE - Static variable in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
 
CUSTOM_GRAY - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
CUSTOM_UNIT_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
CUTKEY - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
CacheAccessException - exception edu.ucsb.nceas.morpho.datastore.CacheAccessException.
This exception is thrown when their is a problem accessing the cache
CacheAccessException(String) - Constructor for class edu.ucsb.nceas.morpho.datastore.CacheAccessException
 
CancelCommand - class edu.ucsb.nceas.morpho.query.CancelCommand.
Class to handle cancel command
CancelCommand(Window) - Constructor for class edu.ucsb.nceas.morpho.query.CancelCommand
Constructor of CancelCommand
CellComparator - class edu.ucsb.nceas.morpho.query.CellComparator.
This class to compare two vecotors which is two dimentions
CellComparator(int, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.CellComparator
Constructor of cellComparator
CitationPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage.
 
CitationPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
CloseCommand - class edu.ucsb.nceas.morpho.plugins.metadisplay.CloseCommand.
 
CodeDefinition - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition.
 
CodeDefinition(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
CodeDefnPanel - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel.
 
CodeDefnPanel() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
CodeDefnPanel(boolean) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
CodeDefnPanel(boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
CodeImportPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage.
 
CodeImportPage(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
CodeImportSummary - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary.
 
CodeImportSummary(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
ColumnData - class edu.ucsb.nceas.morpho.framework.ColumnData.
class to store all the metadate about the data in a column of the table Previously, this was an inner private class defined as part of the TextImportWizard.
ColumnSortableTableModel - interface edu.ucsb.nceas.morpho.util.ColumnSortableTableModel.
Interface for ColumnSortableTableModel
Command - interface edu.ucsb.nceas.morpho.util.Command.
 
ConfigXML - class edu.ucsb.nceas.morpho.framework.ConfigXML.
This class is designed to store configuration information in an XML file.
ConfigXML(String) - Constructor for class edu.ucsb.nceas.morpho.framework.ConfigXML
String passed to the creator is the XML config file name
ConfigXML(InputStream) - Constructor for class edu.ucsb.nceas.morpho.framework.ConfigXML
String passed to the creator is the XML config file name
ConnectionFrame - class edu.ucsb.nceas.morpho.framework.ConnectionFrame.
A graphical window for obtaining login information from the user and logging into Metacat
ConnectionFrame(Morpho) - Constructor for class edu.ucsb.nceas.morpho.framework.ConnectionFrame
Construct a frame and set the framework
ConnectionFrame(Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.ConnectionFrame
Construct the frame
ConnectionListener - interface edu.ucsb.nceas.morpho.framework.ConnectionListener.
Any object that is interested in the status of the morpho framework connection should implement this interface and register with the framework to be notified of changes, including changes to the username and connection status.
CreateNewDataPackageCommand - class edu.ucsb.nceas.morpho.datapackage.CreateNewDataPackageCommand.
Class to handle create new data package command
CreateNewDataPackageCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.CreateNewDataPackageCommand
Constructor of CreateNewDataPackageCommand
CustomList - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList.
Interface CustomList
CustomList(String[], Object[], int, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
constructor - creates a multi-column list based on the parameters passed:
CustomTable - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable.
 
CustomTable(Vector, Vector) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
CustomTablePopupListener - interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTablePopupListener.
Interface CustomTablePopupListener This interface is used to define listeners for popup events for the CustomTable.
CustomUnitPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage.
 
CustomUnitPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
 
cNames - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
cTypes - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
cachedir - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
caculateCenterX(double, int, int) - Static method in class edu.ucsb.nceas.morpho.framework.HelpCommand
 
caculateCenterY(double, int, int) - Static method in class edu.ucsb.nceas.morpho.framework.HelpCommand
 
cancelAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
The action to be executed when the "Cancel" button is pressed
cancelCellEditing() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
cancelGetDocumentFromMetacat() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.query.Query
callback method used by the SAX Parser when the text sequences of an xml stream are detected.
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
SAX handler callback that is called for character content of an element when parsing an XML document.
checkForService(Class) - Method in class edu.ucsb.nceas.morpho.plugins.ServiceController
This method is called by plugins to determine if a particular service has been registered and is available.
checkJavaVersion() - Method in class edu.ucsb.nceas.morpho.Morpho
Description of the Method
checkTriplesForAccess() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
choiceCombo_actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
 
cleanCache() - Method in class edu.ucsb.nceas.morpho.Morpho
delete all files in cache
cleanTemp() - Method in class edu.ucsb.nceas.morpho.Morpho
delete all files in temp
clear() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
Clears all PathElements, resulting in an empty path,
clearAllAttributeImports() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
clearLogStack() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
clearValueAt(JTable, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
cloneAction() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Make a clone of the GUIAction instance.
cloneNodeInfo() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
close() - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
close() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
close the window when requested
colAverage - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colDefinition - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colMax - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colMin - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colMissingValue - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colName - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colNumUniqueItems - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colNumber - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colPrecision - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTextDefinition - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTextPattern - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTextSource - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTitle - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colType - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colUniqueItemsDefs - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colUniqueItemsList - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colUnits - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
collectDataFromPages() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
 
commonTaxonRanks - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
compare(Object, Object) - Method in class edu.ucsb.nceas.morpho.query.CellComparator
The method to compare twso vectors
config - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
connectionBusy - Static variable in class edu.ucsb.nceas.morpho.Morpho
flag set to indicate that connection to metacat is busy used by doPing to avoid thread problem
connectionChanged(boolean) - Method in interface edu.ucsb.nceas.morpho.framework.ConnectionListener
This method is called if there is a change in the connection status.
connectionChanged(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
Implement the ConnectionListener interface so we know when to refresh queries.
construct() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Compute the value to be returned by the get method.
container - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
containsExtendedSQL() - Method in class edu.ucsb.nceas.morpho.query.Query
Returns true if the parsed query contains and extended xml query (i.e.
containsTriple(Triple) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns true if the collection contains triple, false otherwise
copy(File, File) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given Files as inputs
copy(String, String) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given their file names as inputs
copy(File, File, Hashtable) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given Files as inputs, and substitute special tokens with their corresponding values
copy(String, String, Hashtable) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given their file names as inputs, and substitute special tokens with their corresponding values
counter - Static variable in class edu.ucsb.nceas.morpho.editor.DocFrame
counter for name
createDefaultModel() - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Method to create default model for text field
createDomParser() - Static method in class edu.ucsb.nceas.morpho.Morpho
Set up a DOM parser for reading an XML document
createEml2NVPairs() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.TextImportWizardEml2
Create a set (OrderedMap) of Name/Value pairs for eml2 corresponding to the entity/attribute/physical parts of the eml2 tree created by the TextImportWizard.
createMorphoInstance() - Static method in class edu.ucsb.nceas.morpho.Morpho
 
createObject(Constructor, Object[]) - Static method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
createOpenPreviousVersionDialog(String, int, Morpho, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
This method will create a dialog for open previouse version of a datapackage
createOpenPreviousVersionDialog(String, int, Morpho, boolean) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method will create a dialog for open previouse version of a datapackage
createSaxParser(ContentHandler, ErrorHandler) - Static method in class edu.ucsb.nceas.morpho.Morpho
Set up a SAX parser for reading an XML document

D

DATAMENUPOSITION - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Constant int for data menu position
DATAPACKAGEFRAME - Static variable in class edu.ucsb.nceas.morpho.framework.MorphoFrame
 
DATA_FORMAT - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
DATA_LOCATION - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
DATA_MENU_LABEL - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
DBValidate - class edu.ucsb.nceas.morpho.util.DBValidate.
Name: DBValidate.java Purpose: A Class that validates XML documents This class is designed to be parser independent i.e.
DBValidate(String) - Constructor for class edu.ucsb.nceas.morpho.util.DBValidate
Construct a new validation object
DBValidate(String, Morpho) - Constructor for class edu.ucsb.nceas.morpho.util.DBValidate
Construct a new validation object using an OASIS catalog file
DECENDING - Static variable in class edu.ucsb.nceas.morpho.util.SortableJTable
 
DEFAULT_CONTENT_TYPE - Static variable in interface edu.ucsb.nceas.morpho.plugins.PrinterInterface
constant to describe the default content type of the string to be displayed
DEFAULT_CSS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
xsl property used to hold default css stylesheet name
DEFAULT_PARSER - Static variable in class edu.ucsb.nceas.morpho.util.SAXValidate
 
DEFAULT_SPACER_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
DEFAULT_WINDOW_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall height (pixels) of MorphoFrame (after making allowance for client screen height, taskbar etc)
DEFAULT_WINDOW_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall width (pixels) of MorphoFrame (after making allowance for client screen width etc)
DELIMITER - Static variable in class edu.ucsb.nceas.morpho.framework.FileUtils
 
DFHPanel - class edu.ucsb.nceas.morpho.editor.DFHPanel.
DFHPanel is an example of a class that can be dynamically loaded at run time to edit a specific part of an XML document tree.
DFHPanel() - Constructor for class edu.ucsb.nceas.morpho.editor.DFHPanel
Default constructor.
DFHPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.DFHPanel
The primary constructor used to dynamically load the class.
DIALOG_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
DIALOG_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
 
DIALOG_SMALLER_THAN_WIZARD_BY - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
DIALOG_WIDTH - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
DIALOG_WIDTH - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
 
DIFFERENT_DATA_PACKAGE - Static variable in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
 
DOCID - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
DOCIDINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of docid in resultsVector
DOCNAMEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of doc name in resultsVector
DOCTYPEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of doc type in resultsVector
DOCUMENTATIONMENUPOSITION - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Constant int for data menu position
DOMAIN_NUM_ROWS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
DOMTree - class edu.ucsb.nceas.morpho.editor.DOMTree.
Displays a DOM document in a tree control.
DOMTree() - Constructor for class edu.ucsb.nceas.morpho.editor.DOMTree
Default constructor.
DOMTree(Document) - Constructor for class edu.ucsb.nceas.morpho.editor.DOMTree
Constructs a tree with the specified document.
DOM_EDITOR_FINISHED_EDITING - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the DOM Editor has finished the current editing task
DTDTree - class edu.ucsb.nceas.morpho.editor.DTDTree.
class for creating a treeModel based on structure defined in DTD.
DTDTree() - Constructor for class edu.ucsb.nceas.morpho.editor.DTDTree
 
DTDTree(String) - Constructor for class edu.ucsb.nceas.morpho.editor.DTDTree
 
DataFormat - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat.
 
DataFormat(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
 
DataLocation - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation.
 
DataLocation(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
 
DataPackage - class edu.ucsb.nceas.morpho.datapackage.DataPackage.
class that represents a data package.
DataPackage(String, String, Vector, Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackage
Create a new data package object with an id, location and associated relations.
DataPackageFactory - class edu.ucsb.nceas.morpho.datapackage.DataPackageFactory.
class (factory) for creating a new DataPackage
DataPackageFactory() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackageFactory
 
DataPackageInterface - interface edu.ucsb.nceas.morpho.framework.DataPackageInterface.
All component plugins that handle access to data packages should implement this interface and register themselves as a service provider for the interface withthe framework.
DataPackagePanel - class edu.ucsb.nceas.morpho.editor.DataPackagePanel.
DataPackagePanel is an example of a plug-in panel to be used by the XML editor.
DataPackagePanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.DataPackagePanel
 
DataPackagePlugin - class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin.
Class that implements the plugin for package editing
DataPackagePlugin() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Construct the plugin.
DataPackagePlugin(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Construct of the puglin which will be used in datapackage itself
DataPackageWizardInterface - interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface.
Interface for Data Package Wizard Plugin
DataPackageWizardListener - interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardListener.
Interface for Data Package Wizard Plugin
DataPackageWizardPlugin - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin.
Main controller class for creating and starting a Data Package Wizard Plugin
DataPackageWizardPlugin() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Constructor
DataStore - class edu.ucsb.nceas.morpho.datastore.DataStore.
creates an abstract class for getting files from any dataStore using the same methods.
DataStore(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datastore.DataStore
create a new FileSystemDataStore for a Morpho
DataStoreInterface - interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface.
creates an interface for getting files from any dataStore using the same methods.
DataViewContainerPanel - class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel.
A panel that presents a data-centric view of a dataPackage.
DataViewContainerPanel() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
DataViewContainerPanel(AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
DataViewer - class edu.ucsb.nceas.morpho.datapackage.DataViewer.
 
DataViewer() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DataViewer(Morpho, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DataViewer(String, String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DataViewer(Morpho, String, File) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DateTime_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
DateTime_xPath_rel - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
DeleteColumnCommand - class edu.ucsb.nceas.morpho.datapackage.DeleteColumnCommand.
Class to handle delete a column command
DeleteColumnCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DeleteColumnCommand
Constructor of Import data command
DeleteCommand - class edu.ucsb.nceas.morpho.query.DeleteCommand.
Class to handle delete local copy command
DeleteCommand(OpenDialogBox, JDialog, MorphoFrame, String, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.DeleteCommand
Constructor of DeleteCommand
DeleteDialog - class edu.ucsb.nceas.morpho.query.DeleteDialog.
A dialog box for user delete datapakcage
DeleteDialog(MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.DeleteDialog
Construct a new instance of the delete dialog which parent is morphoframe
DeleteDialog(OpenDialogBox, MorphoFrame, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.DeleteDialog
Construct a new instance of the delete dialog which parent is open dialog
DeleteRowCommand - class edu.ucsb.nceas.morpho.datapackage.DeleteRowCommand.
Class to handle delete a row command
DeleteRowCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DeleteRowCommand
Constructor of delete a row command
DeleteTableCommand - class edu.ucsb.nceas.morpho.datapackage.DeleteTableCommand.
Class to handle import data file command
DeleteTableCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DeleteTableCommand
Constructor of Import data command
DelimiterField - class edu.ucsb.nceas.morpho.datapackage.DelimiterField.
A class to handle if input delimiter into text fild
DelimiterField(JPanel, String, String, int) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Constructor of DelimiterField
DelimiterField.NoDelimiterDocument - class edu.ucsb.nceas.morpho.datapackage.DelimiterField.NoDelimiterDocument.
 
DelimiterField.NoDelimiterDocument() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DelimiterField.NoDelimiterDocument
 
DocFrame - class edu.ucsb.nceas.morpho.editor.DocFrame.
DocFrame is a container for an XML editor which shows combined outline and nested panel views of an XML document.
DocFrame() - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
This constructor builds the contents of the DocFrame Display
DocFrame(String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
Constructor which adds a title string to the Frame
DocFrame(String, String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
Constructor which adds a title and passes the xml to display as a string; puts XML into tree
DocFrame(File) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
Constructor for the DocFrame object which pass the xml as a File
DocFrame(Morpho, String, String, boolean) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
This constructor actual handles the creation of a tree and panel for displaying and editing the information is an XML document, as represented in the String 'doctext'
DocFrame(Morpho, String, String, String, String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it
DocFrame(Morpho, String, String, String, String, boolean) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it; includes template flag
DocFrame(Morpho, String, String, String, String, String, String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
this version allows one to create a new DocFrame and set the initially selected nodename/nodetext
DocumentNotFoundException - exception edu.ucsb.nceas.morpho.util.DocumentNotFoundException.
This exception is thrown when a requested document cannot be found
DocumentNotFoundException(String) - Constructor for class edu.ucsb.nceas.morpho.util.DocumentNotFoundException
 
dataPkgFile - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
datadir - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
debug(int, String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
debug(int, String) - Static method in class edu.ucsb.nceas.morpho.util.Log
Print debugging messages based on severity level, where severity level 1 are the most critical and higher numbers are more trivial messages.
decode(char[], int, int) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Decode the base64 data.
decode(String) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Decode the base64 data.
decode(char[], int, int, OutputStream) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Decode the base64 data.
decode(String, OutputStream) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Decode the base64 data.
delete(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
Deletes the package from the specified location
delete(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Deletes the package from the specified location
delete(String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Deletes the package.
delete() - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
delete() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
delete(String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to delete a datapackage from metacat or the local disk.
deleteAction - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
deleteAllEntities() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method deletes the indexed entity from the DOM
deleteAllSubtrees(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
DELETES ALL subtrees identified by genericName String; returns null if none found - USE WITH CARE!!
deleteAttribute(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method deletes the indexed attribute from the indexed entity
deleteColumn(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
deletes the indicated column
deleteEmptyRows(short, short[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Removes any rows that are "empty", as defined by the parameters specified in the passed short array "conditions", as described below.
deleteEntity(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method deletes the indexed entity from the DOM
deleteExistingAndAddPageDataToDOM(AbstractDataPackage, List, String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
deletes all existing subtrees of name subtreeGenericName, then inserts data for each AbstractUIPage in pageList into the passed AbstractDataPackage
deleteFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
deleteFile(String) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
Deletes the file with an id of name.
deleteFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
deletes a file from the local file system.
deleteFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
deletes a file from metacat.
deleteOriginalReferenceSubtree(AbstractDataPackage, String) - Static method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
deletes referenced subtree and transfers its children to te first subtree that references it (if any)
deletePrevious() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
Deletes the String identifier that was most recently added to history
deleteRow(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
delete a row at indicated position vec is assumed to be a Vector of strings
deleteSubtree(String, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
deletes subtree at location identified by genericName and index; returns root Node of deleted subtree, or null if not found, so caller can determine whether call was successful
deleteTriplesInTriplesFile(String, DataPackage, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
method to delete triples with a specified string from the triples file
disableOpenButton() - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to disable the open button
display(String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to display metadata in an existing instance of a visual component (metadata identified by the identifier parameter).
display(String, Reader) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to display metadata in an existing instance of a visual component (metadata is provided as a Reader (the "XMLDocument" parameter), and a required corresponding unique identifier parameter) that can subsequently be used by this component to get the latest instance of the same "XMLDocument" from the XMLFactoryInterface.
display(String, String) - Method in interface edu.ucsb.nceas.morpho.plugins.PrinterInterface
method to display a user-provided String and provide an option to print it.
display(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to display metadata in an existing instance of a visual component (metadata identified by the identifier parameter).
display(String, Reader) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to display metadata in an existing instance of a visual component (metadata is provided as a Reader (the "XMLDocument" parameter), and a required corresponding unique identifier parameter) that can subsequently be used by this component to get the latest instance of the same "XMLDocument" from the XMLFactoryInterface.
display(String, Document) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to display metadata in an existing instance of a visual component (metadata is provided as a DOM, and a required corresponding unique identifier parameter)
display(String, String) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin
 
displayDNPanel() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
displayPrevious() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to redisplay the previous metadata document from History, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
displayPrevious() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to redisplay the previous metadata document from History, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
displaySearchResult(MorphoFrame, ResultPanel, boolean, int, String, boolean, StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.query.Query
This method will run the query and display the query results streamly in a given panel
displayTree(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
Checks if treenode is present - if present, creates a ScrollPane and sends back the scrollpane...
dnField - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
doAddFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
doOwnerQueryForCurrentUser(String[], String) - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
performs a local query to get the documents owned by the user, as identified by the current profile
doOwnerQueryForCurrentUser(String[], String) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
performs a local query to get the documents owned by the user, as identified by the current profile
doQuery(MorphoFrame, Query, boolean, int, String, boolean) - Static method in class edu.ucsb.nceas.morpho.query.SearchCommand
Run the search query
doTransform(String, String) - Static method in class edu.ucsb.nceas.morpho.datapackage.EMLConvert
 
doc - Static variable in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
Document node of the in-memory DOM structure
doc - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
dom_collection - Static variable in class edu.ucsb.nceas.morpho.query.LocalQuery
hash table with dom objects from previously scanned local XML documents; serves as a cache to avoid having to re-parse documents every time an XPath search is carried out.
download(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
Copies the AbstractDataPackage with the indicated id from metacat to the local file store
download() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Downloads a metacat package to the local disk
download(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Downloads the package from metacat.
download(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
 
download(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
 
download(String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to download a datapackage from metacat to the local disk.
dtd - Variable in class edu.ucsb.nceas.morpho.editor.DTDTree
 
dtdtree - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
 
dtm - Variable in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
dtm - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
duplicateAction - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 

E

EDITBUTTON_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
EDITBUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
EDITMENUPOSITION - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Constant int for edit menu position
EDIT_BEGIN_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
descriptive constant used in ActionEvents generated by the display Signifies that the user has issued a command to edit the metadata
EDIT_MENU_LABEL - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
EML200DataPackage - class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage.
class that represents a data package.
EML200DataPackage() - Constructor for class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
 
EML2Beta6DataPackage - class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage.
class that represents a data package.
EML2Beta6DataPackage() - Constructor for class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
 
EMLConvert - class edu.ucsb.nceas.morpho.datapackage.EMLConvert.
 
EMLConvert() - Constructor for class edu.ucsb.nceas.morpho.datapackage.EMLConvert
 
EMPTY_STRING_NOTRIM - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
EMPTY_STRING_TRIM - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
ENTITY - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
ENTITY_CSS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
xsl property used to hold entity/attribute css stylesheet name
ENTITY_DATATABLE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
ENTITY_WIZ_FIRST_PAGE_ID - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
ENTITY_WIZ_SUMMARY_TITLE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
ENTITY_WIZ_SUMMARY_TITLE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
EVENT_GLOBAL - Static variable in class edu.ucsb.nceas.morpho.util.GUIAction
Public constant to denote that a GUIAction should consume events originating from any frame, not just its own
EVENT_LOCAL - Static variable in class edu.ucsb.nceas.morpho.util.GUIAction
Public constant to denote that a GUIAction should consume events originating only within the same frame as the GUIAction itself
EditColumnMetaDataCommand - class edu.ucsb.nceas.morpho.datapackage.EditColumnMetaDataCommand.
Class to handle edit column meta data command
EditColumnMetaDataCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.EditColumnMetaDataCommand
Constructor of edit column meta data command
EditCommand - class edu.ucsb.nceas.morpho.plugins.metadisplay.EditCommand.
 
EditingCompleteListener - interface edu.ucsb.nceas.morpho.framework.EditingCompleteListener.
Any object that is interested in being notified when editing of an XML document is complete and obtaining a copy of the edited (new) document should implement this interface and register with the editor document
EditorInterface - interface edu.ucsb.nceas.morpho.framework.EditorInterface.
All component plugins that require the editing of XML documents should implement this interface and register themselves as a service provider for the interface with the framework.
EditorPlugin - class edu.ucsb.nceas.morpho.editor.EditorPlugin.
 
EditorPlugin() - Constructor for class edu.ucsb.nceas.morpho.editor.EditorPlugin
Construct the editor plugin.
Entity - class edu.ucsb.nceas.morpho.datapackage.Entity.
class that represents a Entity
Entity(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Entity
 
Entity(String, OrderedMap) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Entity
 
Entity(Node) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Entity
 
Entity(Node, AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Entity
 
Entity - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity.
 
Entity(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
 
ExportCommand - class edu.ucsb.nceas.morpho.query.ExportCommand.
Class to handle export package (both regular and zip) command
ExportCommand(OpenDialogBox, String, ExportDialog) - Constructor for class edu.ucsb.nceas.morpho.query.ExportCommand
Constructor of ExportCommand
ExportDialog - class edu.ucsb.nceas.morpho.query.ExportDialog.
A dialog box for user choice of export options
ExportDialog(MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.ExportDialog
Construct a new instance of the dialog where parent is morphoframe
ExportDialog(OpenDialogBox, MorphoFrame, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.ExportDialog
Construct a new instance of the delete dialog when parent is open dialog
ExternalRefsPage - class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage.
 
editAction - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
editCellAt(int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to edit a particular cell.
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
editingCanceled(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.EditingCompleteListener
this method handles canceled editing
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Required by EditingCompleteListener Interface: this method handles canceled editing
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
editingCompleted(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.EditingCompleteListener
This method is called when editing is complete
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Required by EditingCompleteListener Interface: This method is called when editing is complete
editingOriginalRef - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
 
edu.ucsb.nceas.morpho - package edu.ucsb.nceas.morpho
 
edu.ucsb.nceas.morpho.datapackage - package edu.ucsb.nceas.morpho.datapackage
 
edu.ucsb.nceas.morpho.datastore - package edu.ucsb.nceas.morpho.datastore
 
edu.ucsb.nceas.morpho.editor - package edu.ucsb.nceas.morpho.editor
 
edu.ucsb.nceas.morpho.exception - package edu.ucsb.nceas.morpho.exception
 
edu.ucsb.nceas.morpho.framework - package edu.ucsb.nceas.morpho.framework
 
edu.ucsb.nceas.morpho.plugins - package edu.ucsb.nceas.morpho.plugins
 
edu.ucsb.nceas.morpho.plugins.datapackagewizard - package edu.ucsb.nceas.morpho.plugins.datapackagewizard
 
edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages - package edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages
 
edu.ucsb.nceas.morpho.plugins.metadisplay - package edu.ucsb.nceas.morpho.plugins.metadisplay
 
edu.ucsb.nceas.morpho.plugins.printer - package edu.ucsb.nceas.morpho.plugins.printer
 
edu.ucsb.nceas.morpho.plugins.xsltresolver - package edu.ucsb.nceas.morpho.plugins.xsltresolver
 
edu.ucsb.nceas.morpho.query - package edu.ucsb.nceas.morpho.query
 
edu.ucsb.nceas.morpho.util - package edu.ucsb.nceas.morpho.util
 
elementAt(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
enableOpenButton() - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to enable the open button
encode(byte[]) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Returns base64 representation of specified byte array.
encode(byte[], int, int) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Returns base64 representation of specified byte array.
encode(byte[], int, int, OutputStream) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Outputs base64 representation of the specified byte array to a byte stream.
encode(byte[], int, int, Writer) - Static method in class edu.ucsb.nceas.morpho.util.Base64
Outputs base64 representation of the specified byte array to a character stream.
endDocument() - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.query.Query
callback method used by the SAX Parser when the end tag of an element is detected.
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
SAX handler callback that is called upon the end of an element when parsing an XML document.
endPrefixMapping(String) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
entityArray - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
enumChoice - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumCodeVector - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumDefinitionVector - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumSourceVector - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
error(SAXParseException) - Method in class edu.ucsb.nceas.morpho.util.SAXValidate
Method for handling errors during a parse
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.Morpho.CreateNewProfileCommand
 
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddAccessCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddGeographicCovCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMethodCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddResearchProjectCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddTaxonomicCovCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddTemporalCovCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddUsageRightsCommand
execute add command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.CreateNewDataPackageCommand
execute create data package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DeleteColumnCommand
execute insert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DeleteRowCommand
execute delete row command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DeleteTableCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.EditColumnMetaDataCommand
execute edit column meta data command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.ImportDataCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
execute insert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
execute insert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.RevertAllCommand
execute the revertall command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.RevertCommand
execute the revert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.SavePackageCommand
execute the save datapackage command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.SortDataTableCommand
execute sort data table command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
execute paste command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
execute paste command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
execute paste command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.ViewDocumentationCommand
 
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.framework.HelpCommand
execute help command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.framework.HelpMetadataIntroCommand
 
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.framework.LoginCommand
execute command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.BackCommand
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.CloseCommand
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.EditCommand
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PreviewCommand
 
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintCommand
 
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.CancelCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.DeleteCommand
execute delete local package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.ExportCommand
execute delete local package command
execute() - Method in class edu.ucsb.nceas.morpho.query.LocalQuery
Run the query against the local document store
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.LocalToNetworkCommand
execute open package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.NetworkToLocalCommand
execute open package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand
execute open delete dialog command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenExportDialogCommand
execute open export dialog command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
execute open package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenPreviousVersionCommand
execute delete local package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand
execute cancel command
execute() - Method in class edu.ucsb.nceas.morpho.query.Query
Run the query against the local data store and metacat, depending on how the searchMetacat and searchLocal flags are set.
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.RefreshCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.ReviseSearchCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.SaveQueryCommand
execute savequery command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.SearchCommand
execute cancel command
execute(ActionEvent) - Method in interface edu.ucsb.nceas.morpho.util.Command
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.util.SortTableCommand
execute sort table command
exists(String) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Checks to see if a document with the id exists on Metacat
exitApplication() - Method in class edu.ucsb.nceas.morpho.Morpho
Exit the application, asking the user if they are sure
exitProgressBarThread() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Stops the timer, closes the dialog and exits.
expandIt(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable
 
export(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
exports a package to a given path
export(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
exports a package to a given path
export(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Exports the package.
export(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method exports an entire data package to a given location.
exportDataFiles(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
copies all the data files in a package to a directory indicated by 'path'.
exportToEml2(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
transforms a package to eml2; first exports the metadata
exportToEml2(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Exports the package to eml2
exportToEml2(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
transforms a package to eml2; first exports the metadata
exportToEml2(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method exports an entire data package to a given location to eml2
exportToZip(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
Exports a package to a zip file at the given path
exportToZip(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Exports a package to a zip file at the given path
exportToZip(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Exports the package into a zip file
exportToZip(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method exports an entire data package to a given location in a zip file.

F

FILE_MENU_LABEL - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
FINISH_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
FOCUSED_BORDER_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
FOCUS_BORDER_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
FRAME_AND_TASKBAR_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
FileSystemDataStore - class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore.
implements and the DataStoreInterface for accessing files on the local file system.
FileSystemDataStore(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
create a new FileSystemDataStore for a Morpho
FileUtils - class edu.ucsb.nceas.morpho.framework.FileUtils.
This class provides convenience methods for manipulating filesystem objects, such as copying from one file to another.
FileUtils() - Constructor for class edu.ucsb.nceas.morpho.framework.FileUtils
 
fileSysDataStore - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
findTemplateNodeByName(String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
locate the first node in the template tree by name return null if unable to locate to be used to get subtrees
finishAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
The action to be executed when the "Finish" button is pressed.
finished() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Called on the event dispatching thread (not on the worker thread) after the construct method has returned.
fireActionEvent(int, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Does callback to actionPerformed() method of each java.awt.event.ActionListener in the list of registered listeners.
fireAddAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to fire the Add action of the CustomList.
fireDeleteAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to fire the Delete action of the CustomList.
fireDuplicateAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to fire the Duplicate action of the CustomList.
fireEditAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to fire the Edit action of the CustomList.
fireEditingCanceled() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
Notify all listeners that have registered interest for notification on this event type.
fireEditingCanceledEvent(DocFrame, String) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
Fire off notifications to EditingCanceledListeners when the editing has been completed
fireEditingCompleteEvent(DocFrame, String) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
Fire off notifications to EditingCompleteListeners when the editing has been completed
fireEditingStopped() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Tells the list to stop editing and commit all edited values to the model.
fireEditingStopped() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
Notify all listeners that have registered interest for notification on this event type.
fireMoveDownAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to fire the Move-Down action of the CustomList.
fireMoveUpAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Method to fire the Move-Up action of the CustomList.
fireTreeNodesChanged(Object, Object[], int[], Object[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
fireTreeNodesInserted(Object, Object[], int[], Object[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
fireTreeNodesRemoved(Object, Object[], int[], Object[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
fireTreeStructureChanged(Object, Object[], int[], Object[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
firstRow - Variable in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
allow for header rows
focusAddButton() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Gives the "Add" button keyboard focus
frame - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
 

G

GENERAL - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
GEOGRAPHIC - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
GEOGRAPHIC_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
GUIAction - class edu.ucsb.nceas.morpho.util.GUIAction.
Class GUIAction This class extends javax.swing.AbstractAction in order to provide basic "Action" functionality for the GUI.
GUIAction(String, Icon, Command) - Constructor for class edu.ucsb.nceas.morpho.util.GUIAction
Constructor
General - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General.
 
General() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
 
Geographic - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic.
 
Geographic() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
 
GeographicPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage.
 
GeographicPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
generateAccessTree() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
Generates Access.accessTreeNode ...
get(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Gets the value(s) corresponding to a key string (i.e.
get(String, int) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Gets the value(s) corresponding to a key string (i.e.
get() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Return the value created by the construct method.
getAbstractDataPackage() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
returns the AbstractDataPackage for this Panel
getAbstractDataPackage() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getAbstractDataPackage() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Get AbstractDataPackage represented by this frame, if it exists.
getAbstractState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
returns state of Abstract checkbox
getAcceleratorKey() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Method to get accelerator key
getAccessFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
get the id of the access doc for the indicated id
getAccessFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
get the id of the access doc for the indicated id
getAccessFileIdForDataPackage() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getAccessId() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the access file's id from the package
getAccessionNumber() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method to retrieve accession number from DOM
getAllIdentifiers() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns a vector containing a distinct set of all of the file ids that make up this package
getAllIdentifiers() - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
returns a vector containing a distinct set of all of the file ids that make up this package
getAllState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
get state of 'All' check box
getAsStringBuffer(Reader, boolean) - Static method in class edu.ucsb.nceas.morpho.util.IOUtil
reads character data from the Reader provided, using a buffered read.
getAttrValue(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getAttribute(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get an attribute value by name
getAttributeArray(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method creates an array of attribute Nodes for the indexed entity in the entityNode array.
getAttributeCountForAnEntity(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method gets the count of the attributes present in a particular entity
getAttributeDataType(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getAttributeDoc() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get the attribute documentation
getAttributeFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getAttributeFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getAttributeID(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getAttributeImportCount() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getAttributeIndex(int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method retreives the attribute index given an Attribute Name and the index of the entity that the attribute is present in.
getAttributeName(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getAttributeUnit(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getAttributes() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns a hashtable of vectors with the basic values in it.
getAttributes() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the attributes as a string
getAuthor() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method to get the DataPackage author May be overridden for specific package types to give better response (e.g.
getAuthor() - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
override method in AbstractDataPackage to get all authors and combine name fields
getBottom() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getCardinality() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getCellEditorValue() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
getChangeFlag() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getChangedState() - Method in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Get the value of the changedState for this event.
getChild(Object, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getChildCount(Object) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getChildren(Object) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getChildren() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the an enumeration of the children of this node
getChildren() - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Retrieve an Enumeration of query terms for this QueryGroup
getClipboardObject() - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
getCollection() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
return a vector of Triple objects that represent this collection.
getCollectionByObject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a vector of triples with the given object
getCollectionByRelationship(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a vector of triples with the given relationship
getCollectionBySubject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a vector of triples with the given subject
getColumnClass(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
getColumnClass(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getColumnClass(int) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel
Returns the type for column number column.
getColumnClass(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
getColumnClass(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the Class for each column so that they can be rendered correctly.
getColumnCount() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getColumnCount() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
getColumnCount() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getColumnCount() - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel
Returns the number ofs availible column.
getColumnCount() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
getColumnCount() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the number of columns in this result set
getColumnData(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
getColumnData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
Function to retrieve the imported data from the columns selected by the user.
getColumnHeaderStrings(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
getColumnLabels() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get the column_lables
getColumnName(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getColumnName(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getColumnName(int) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel
Returns the name for column number column.
getColumnName(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
getColumnName(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Determine the name of a column by its index
getColumnValues(File, Vector, int, String, boolean, int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
getCommand() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the edu.ucsb.nceas.morpho.util.Command for this item.
getCommand() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the command in this action object
getCommandObject(int) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
return an instance of a Command object, identified by one of the integer constants defined above
getCommandObject(int) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
return an instance of a Command object, identified by one of the integer constants defined above
getCommandObject(int) - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
return an instance of a Command object, identified by one of the integer constants defined above
getCommandObject(int) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
return an instance of a Command object, identified by one of the integer constants defined above
getCompressionMethod(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the compression method for the indexed entity and physical object.
getConfigDirectory() - Static method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Determine the home directory in which configuration files should be located
getConfigFileTypeAttributes(Morpho, String) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
gets the file types from the config file and hashes them by a specified attribute
getConfiguration() - Static method in class edu.ucsb.nceas.morpho.Morpho
Get the configuration object associated with the framework.
getContainer() - Method in class edu.ucsb.nceas.morpho.datapackage.Attribute
 
getContainer() - Method in class edu.ucsb.nceas.morpho.datapackage.Entity
 
getContentComponent() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Get the contentComponent of MorphoFrame
getContentType() - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Get the content header after encoding.
getCookie() - Static method in class edu.ucsb.nceas.morpho.framework.HttpMessage
return the cookie that this message object contains
getCoverageNode() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
checks to see if the package has a coverage element at the package level returns a Node if it finds one; otherwise, null
getCurrentAbstractDataPackage() - Method in class edu.ucsb.nceas.morpho.framework.UIController
get AbstractDataPackage from currently active window
getCurrentActiveWindow() - Method in class edu.ucsb.nceas.morpho.framework.UIController
get currently active window
getCurrentDataViewer() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method to get current data viewer
getCurrentExistingAbstractDataPackage() - Method in class edu.ucsb.nceas.morpho.framework.UIController
get AbstractDataPackage from currently active window.
getCurrentImportAttributeName() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getCurrentImportEntityName() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getCurrentImportMap() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getCurrentImportScale() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getCurrentImportXPath() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getCurrentPage() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
gets the wizard content from the center pane
getCurrentProfileName() - Static method in class edu.ucsb.nceas.morpho.Morpho
Get the profile name for the currently logged in user.
getCurrentTransformerProperties() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Returns all name/value pairs describing the properties to be set for the transformer, in the form of a Properties object *NOTE* this method returns a clone of the Properties, not a reference to the Properties object itself!
getCustomAddAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Gets the javax.swing.Action to be executed on pressing the ADD button.
getCustomDeleteAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Gets the javax.swing.Action to be executed on pressing the appropriate list button.
getCustomDuplicateAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Gets the javax.swing.Action to be executed on pressing the appropriate list button.
getCustomEditAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Gets the javax.swing.Action to be executed on pressing the appropriate list button.
getDOMTreeAsString(Node) - Static method in class edu.ucsb.nceas.morpho.util.XMLUtil
 
getData(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getData(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getDataChangedFlag() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getDataFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getDataFile() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
returns data file object
getDataFileID(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the ID (i.e.
getDataFileName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the original text name of the datafile, which for EML beta6 is contained in the triples relationship string, inside parentheses)
getDataLocation() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
gets data location to be used in summary text that will be shown on the page of the wizard.
getDataPackage(Reader, boolean, boolean) - Static method in class edu.ucsb.nceas.morpho.datapackage.DataPackageFactory
Create a new Datapackage given a Reader to a metadata stream location is given by 2 booleans
getDataPackage(String, boolean, boolean) - Static method in class edu.ucsb.nceas.morpho.datapackage.DataPackageFactory
Create a new Datapackage given a docid of a metadata stream location is given by 2 booleans
getDataPackage(Node) - Static method in class edu.ucsb.nceas.morpho.datapackage.DataPackageFactory
given the root node in a DOM, create an AbstractDataPackage object needed for use with DPWizard?
getDataTable() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get data table
getDataViewContainerPanel() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Get DataViewContainerPanel from this frame, if it exists.
getDateTimePanel(String, JTextField, JCalendar) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
Function returns a JPanel for selecting date
getDefaultContentAreaSize() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Returns the default size that the content area should be on this screen.
getDefaultIcon() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the default Icon for this action object
getDefinitionsForUnitType(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
returns the definition for a given unit type as a list of terms.
getDialog() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the dialog from ResultPanle
getDialogParent() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
gets the JFrame to be used as the owner by a popup dialog.
getDimForNumberOfLines(int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
getDisplayComponent(String, XMLFactoryInterface, ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method used to obtain a visual component (a descendent of java.awt.Component, which will display the XML resource identified by the identifier parameter.
getDisplayComponent(XMLFactoryInterface, ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method used to obtain a visual component (a descendent of java.awt.Component, which will subsequently display the XML resources identified by unique string IDs.
getDisplayComponent(String, XMLFactoryInterface, ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method used to obtain a visual component (a descendent of java.awt.Component, which will display the XML resource identified by the identifier parameter.
getDisplayComponent(XMLFactoryInterface, ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method used to obtain a visual component (a descendent of java.awt.Component, which will subsequently display the XML resources identified by unique string IDs.
getDisplayFormOfUnitType(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
returns the display string for a given unit Type.
getDisplayName() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the text display name for this item.
getDisplayString() - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTablePopupListener
gets an optional String to be displayed in the table header.
getDistributionArray(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method creates an array of 'distribution' nodes, following the eml2 model of a subtree with information about the distribution of the actual data being characterized by the metadata.
getDistributionInlineData(int, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns 'inline' data as a String for the indexed entity, physical object, and distribution object.
getDistributionUrl(int, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the url for data as a String for the indexed entity, physical object, and distribution object.
getDoc(File, String) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
parses file with the dom parser and returns a dom Document
getDoc(File, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
parses file with the dom parser and returns a dom Document
getDocID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the doc id of this node
getDocIdFromMorphoFrame(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Method to get docid from a given morpho frame
getDocIdFromMorphoFrame(MorphoFrame) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Method to get docid from a given morpho frame
getDocType() - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Method returns the doctype
getDocType() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
get the doctype
getDocument() - Method in class edu.ucsb.nceas.morpho.editor.DOMTree
Returns the document.
getDocument() - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Gets the document for this DOM
getDocumentFromFile() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
getDocumentFromMetacat() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
getEast() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getEditingRow() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable
 
getEditor(Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
gets the editor context and returns it
getEditor() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getElementInfo(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getElementInfo(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getElements(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
given a DefaultMutableTreeNode, build a Hashtable of all elements that have text i.e.
getElements(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
given a DefaultMutableTreeNode, build a Hashtable of all elements that have text i.e.
getEnableMouseListener() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get current of value of enable mouse listener
getEncodingMethod(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the encoding method for the indexed entity and physical object.
getEntityArray() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getEntityCount() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method gets the count of the entities present in the package
getEntityDescription(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method retrieves the entity Description, given the index of the entity in the entityNode array
getEntityFile(Morpho, AbstractDataPackage, int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
getEntityFileId() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get EntityFileid
getEntityID(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method retrieves the entity ID, given the index of the entity in the entityNode array
getEntityIndex(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method retrieves entity index information, given the name of the entity in the entityNode array
getEntityIndex() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getEntityInfo() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getEntityName(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method retrieves entityName information, given the index of the entity in the entityNode array
getEntityNumRecords(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method retrieves the number of records in thr entity, given the index of the entity in the entityNode array
getFactory() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Get the current XML factory, used to resolve IDs into XML documents
getFieldDelimiter() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get field_delimiter string
getFieldDelimiter() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to get field delimiter
getFileFromId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getFileName() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
 
getFileWithID(String, Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getFilterDocList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the filter doc types as defined in the <filterdoctype> tag in the pathquery dtd.
getFirstPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
returns the String ID of the first page that was displayed in the current wizard sequence.
getFirstRow() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to get the value of first Row
getFramework() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method to get frame work
getFramework() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Get a reference to the Morpho application framework
getGUIActionCloneUsedByMorphoFrame(GUIAction, MorphoFrame) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
This method can be used if you have the original GUIAction instance and want to get the existing clone of it that was put into a particular MorphoFrame by UIController.
getGenericName() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
Method to return genericName
getGenericValue(String) - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
getGeographicNodeList() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
gets a list of geographic nodes
getHTMLPanel() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
protected method: get a reference to the embedded HTMLPanel object
getHashtable(String, String, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Assume that there is some parent node which has a subset of child nodes that are repeated e.g.
getHeader() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
protected method: get a reference to the embedded HeaderPanel object
getHeaderHeight() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
getHeaderLinesVector() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to get headerLinesVector
getHelp() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getHiddenInstance() - Static method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Create a new instance and set its visible to false
getHistory() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
 
getID() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the id of the head of this package (i.e.
getID() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceMapping
 
getIDsForNodesWithName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns a java.util.List containing IDs of all the rootnodes of all the subtrees identified by the passed unique String.
getIcon() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getIconName() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getIdString() - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Gets the IdString attribute of the DocFrame object
getIdWithoutVersion(String) - Static method in class edu.ucsb.nceas.morpho.query.ResultPanel
Given a docid, return the string withoutversion
getIdentifier() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Get the String identifier associated with the currently-displayed metadata
getIdentifier() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Get the String identifier associated with the currently-displayed metadata
getIdentifier() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return the identifier of this Query
getInMemoryNum() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
getIndexOfChild(Object, Object) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
getIndexOfSortedColumn() - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Get the index of Sorted column
getIndexOfTaxonRank(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
getInitialId() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
gets the initialId variable
getInstance() - Static method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Create a new instance and set its default size
getInstance() - Static method in class edu.ucsb.nceas.morpho.framework.UIController
Get the single instance of the UIController, creating it if needed.
getInstance() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayFactoryInterface
Return a new instance of an object that implements the MetaDisplayInterface.
getInstance() - Static method in class edu.ucsb.nceas.morpho.plugins.ServiceController
Get the single instance of the ServiceController, creating it if needed.
getInstance() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Required by MetaDisplayFactoryInterface: Returns a new instance of an object that implements the MetaDisplayInterface
getInstance() - Static method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
Get the single instance of the StateChangeMonitor, creating it if needed.
getInstance() - Static method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Used to get a shared instance of the XMLTransformer
getItem() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getJComboBox(AbstractDataPackage, ReferencesListener, Frame) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
get a JComboBox containing a blank entry at location (0), an entry to launch an ExternalRefsDialog at location (1), and all the IDs in the current DataPackage that point to subtree root-nodes corresponding to the genericName used to instantiate this ReferencesHandler, and whose values are String surrogates for those referenced subtrees
getJTable() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the Jable
getJToolBar() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
get the tool bar.
getJToolBarDims() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Returns the size of the toolbar
getJavaVersionFlag() - Method in class edu.ucsb.nceas.morpho.Morpho
returns true if the JVM version is 1.3 or greater
getKeys() - Method in class edu.ucsb.nceas.morpho.util.ObjectCache
get enumeration of current docids (keys)
getKeywords() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method for getting package keywords
getKeywordsState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
returns state of Keywords check box
getLast() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
Gets the PathElement that is currently at the end of the path
getLastImportedAttributes() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getLastImportedDataSet() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getLastImportedEntity() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getLastTabSelected() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
get the last tab selected in the entities display
getLeft() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getLength() - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Get the length in bytes of this form after encoding.
getListOfImportedTaxa() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
 
getListOfRowLists() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
returns a java.util.List containing elements that are also java.util.List objects, each of which represents a row from the list.
getLocalLocation() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the local location
getLocation() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
Method to return the location
getLocation() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the location of the data package.
getLocation() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
get location of original metadata to be referenced
getLocationString() - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Gets the LocationString attribute of the DocFrame object
getLog() - Static method in class edu.ucsb.nceas.morpho.util.Log
Get the single instance of the Log
getLogStack() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getMaximumValue() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
gets the maximum value of the progress bar
getMenuItemPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the menu item position for this action
getMenuName() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the menu name for this action
getMenuPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the menu position for this action
getMessage() - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Gets the text message currently being displayed
getMetaDisplay(int) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayFactoryInterface
Return a reference to an existing object that implements the MetaDisplayInterface.
getMetaDisplay(int) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Required by MetaDisplayFactoryInterface: Returns a reference to an existing object that implements the MetaDisplayInterface.
getMetaDisplayUI() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
 
getMetacatInputStream(Properties, boolean) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatInputStream(Properties) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatLocation() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the metacatLoc
getMetacatString(Properties, boolean) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatString(Properties) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatURLString() - Method in class edu.ucsb.nceas.morpho.Morpho
Get metacat URL string
getMetadataNode() - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
getMetadataPath() - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
getMorpho() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get morpho
getMorpho() - Static method in class edu.ucsb.nceas.morpho.framework.UIController
get Morpho
getMorpho() - Method in class edu.ucsb.nceas.morpho.query.Query
get the morpho from query
getMorpho() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Get the morpho attribute
getMorphoFrameAncestor(Component) - Static method in class edu.ucsb.nceas.morpho.util.GUIAction
 
getMorphoFrameContainingGUIAction(GUIAction) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
return the MorphoFrame that contains the GUIAction clone provided
getName() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getNetworkStatus() - Method in class edu.ucsb.nceas.morpho.Morpho
Determine whether a network connection is available before trying to open a socket, since this would cause an error
getNewHistoryItemInstance(String, Properties) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
public accessro for protected class; primarily for testing
getNewUniqueReferenceID() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns a new refID that is guaranteed to be unique within this datapackage
getNextId() - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
returns the next local id from the config file returns null if configXML was unable to increment the id number
getNextId(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
returns the next local id from the config file returns null if configXML was unable to increment the id number
getNextId(Morpho) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
returns the next local id from the config file returns null if configXML was unable to increment the id number
getNextPageID() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNextPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
Returns the ID of the page that the user will see next, after the "Next" button is pressed.
getNode() - Method in class edu.ucsb.nceas.morpho.datapackage.Attribute
 
getNode() - Method in class edu.ucsb.nceas.morpho.datapackage.Entity
 
getNode(String) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getNode(Object) - Method in class edu.ucsb.nceas.morpho.editor.DOMTree
get the org.w3c.Node for a MutableTreeNode.
getNode(String) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getNodeID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the id of this node
getNodeIndex() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get nodeIndex of the node
getNodeList() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
 
getNodeType() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the type of this node
getNodeVisLevel() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getNorth() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getNumberOfPages() - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
Returns the number of pages over which the canvas will be drawn.
getNumberOfPrevVersions(String) - Static method in class edu.ucsb.nceas.morpho.query.ResultPanel
Given a docid, caculate the number of its previous versions
getObject() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
get the object of this triple
getObject(String) - Method in class edu.ucsb.nceas.morpho.util.ObjectCache
get an object in the cache; returns null if object is not in the cache or has been garbage collected
getObjectLength(long) - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
getOneColumnValue(File, int, int, String, int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
getOperator() - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Retrieve the operator for this QueryGroup
getOrderOfSortedColumn() - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Get the sorted table oder statuts
getOriginalAction() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the original action from which a clone was made.
getOriginalEntityArray() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getOwnerList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the owner fields as defined in the <owner> tag in the pathquery dtd.
getOwnerQuery() - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand
Construct a query suitable for getting the owner documents
getPCValue() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getPV() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getPackageId() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method to retrieve packageID from DOM synonym for getAccessionNumber
getPackageLocation() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
get location of the AbstractDataPackage associated with this object
getPackageName() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the package name (docid without version).
getPage(String) - Method in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
returns the WizardPage with the corresponding pageID provided
getPage(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
returns the WizardPage with the corresponding pageID provided
getPage(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageLibrary
returns the WizardPage with the corresponding pageID provided
getPageData() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
gets the Map object that contains all the key/value paired settings for this particular UI page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
gets the Map object that contains all the key/value paired settings for this particular UI page
getPageData() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
gets the Map object that contains all the key/value paired settings for this particular UI page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
gets the Map object that contains all the key/value paired settings for this particular UI page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
gets the Map object that contains all the key/value paired settings for this particular UI page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
gets the Map object that contains all the key/value paired settings for this particular UI page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
gets the Map object that contains all the key/value paired
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
gets the Map object that contains all the temporal/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
gets the Map object that contains all the temporal/value paired settings for this particular wizard page
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
 
getPageData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
 
getPageData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
gets the Map object that contains all the key/value paired settings for this particular wizard page
getPageFormat() - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
 
getPageFormat(int) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
Returns the PageFormat of the page specified by pageIndex.
getPageFormat() - Static method in class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin
 
getPageID() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
gets the unique ID for this UI page
getPageID() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
gets the unique ID for this UI page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
gets the Page ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
gets the unique ID for this wizard page
getPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
gets the unique ID for this wizard page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
Returns the serial number of the page
getPageNumber() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
Returns the serial number of the page
getPanelData(String) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageSubPanelAPI
gets the Map object that contains all the key/value paired
getPanelData() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
gets the Map object that contains all the key/value paired settings for this particular wizard panel
getPanelData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
gets the Map object that contains all the key/value paired settings for this particular wizard panel, given a prefix xPath
getPanelData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.IntervalRatioPanel
 
getPanelData(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
gets the Map object that contains all the key/value paired
getParentDialog() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
gets the parentDialog
getParentFrame() - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBox
Method to get the parent morphoFrame of dialog
getParentID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the parent id of this node
getParts(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
Returns a vector with all components of the accession number.
getPassword() - Method in class edu.ucsb.nceas.morpho.Morpho
get password associated with this framework
getPassword() - Method in class edu.ucsb.nceas.morpho.framework.ConnectionFrame
gets the user-entered password from the client
getPassword() - Method in interface edu.ucsb.nceas.morpho.framework.LoginClientInterface
gets the user-entered password from the client
getPathContent(File, Vector, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Takes in a vector of paths and searches for each of the paths until a node is found that matches the paths.
getPathContent(File, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
gets the content of a tag in a given xml file with the given path
getPathContent(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
gets the content of a tag in a given xml file with the given path
getPathExpression() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
get the path expression parameter
getPathToRoot() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the edu.ucsb.nceas.morpho.plugins.metadisplay.Path from this item to the root item.
getPersistentTableModel() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get persistent talbe model
getPersistentVector() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getPhysicalArray(int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getPhysicalFieldDelimiter(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the FieldDelimiter for the indexed entity and physical object.
getPhysicalFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getPhysicalFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getPhysicalFormat(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the physocal format.
getPhysicalName(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the name of indexed physical object for the indicated entity index.
getPhysicalNumberHeaderLines(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the number of header lines for the indexed entity and physical object.
getPhysicalSize(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method returns the size for the indexed entity and physical object.
getPopupDialog() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.AbstractCustomTablePopupHandler
gets the dialog that is be popped up when the user clicks on a table header.
getPopupDialog() - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTablePopupListener
gets the dialog that is be popped up when the user clicks on a table header.
getPreferredType(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
returns the preferred unit for each unitType; to be used for setting the default unit type
getPrevious() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
Gets the String identifier that was most recently added to history, and actually removes it from history
getPreviousElement() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the previous PathElementInterface from the path
getPreviousPage() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
returns the AbstractUIPage object representing the previous page that was displayed in the current wizard sequence.
getPreviousPageID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
returns the String ID of the previous page that was displayed in the current wizard sequence.
getPreviousVersions() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the version number.
getPrintable(int) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
Returns the Printable instance responsible for rendering the page specified by pageIndex.
getProfile() - Method in class edu.ucsb.nceas.morpho.Morpho
Get the profile ConfigXML for the currently logged in user.
getProfilesList() - Method in class edu.ucsb.nceas.morpho.Morpho
 
getProgressBar() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
gets the progress bar
getProgressBarString() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
gets the string that is shown on the progress bar.
getProgressUpdateTime() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
gets the time after which progress bar is updated
getProgressUpdateValue() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
gets the integer value by which progress bar is updated
getQuery() - Method in class edu.ucsb.nceas.morpho.query.QueryDialog
Get the Query built using this dialog box
getQuery() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Get the query that was used to construct these results
getQuery() - Method in class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
Get query from the object
getQueryGroup() - Method in class edu.ucsb.nceas.morpho.query.Query
get the QueryGroup used to express query constraints
getQueryTitle() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return the title of this Query
getRangeTimePanel() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
Function returns a JPanel for selecting range of time
getRefID() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
gets the referenceID for this wizard page
getReferenceID() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
get referenced id string
getReferenceSelectionEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
 
getReferencedNode(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
This method follows the pointer stored in 'references' node to return the DOM node referred to by 'references'
getReferencedNode(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
This method follows the pointer stored in 'references' node to return the DOM node referred to by 'references' This is really specific to eml2; thus just returns input
getReferences(AbstractDataPackage, String) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
get a Map whose keys are all the IDs currently in the DataPackage that point to subtree root-nodes corresponding to the genericName used to instantiate this ReferencesHandler, and whose values are String surrogates for those referenced subtrees
getReferencesNodeIDString() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
gets the referencesNodeIDString - ie if this party is a reference to another party, this method returns the reference id value it is using to "point to" that other party
getRelatedFiles() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns a hashtable of the related files taken from the triples.
getRelationship() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
get the relationship of this triple
getResultPanel() - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBox
Method to get the parent morphoFrame of dialog
getResultPanelFromMorphoFrame(MorphoFrame) - Static method in class edu.ucsb.nceas.morpho.query.RefreshCommand
Gave a morphoFrame, get resultpanel from it.
getResultSet() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the result set from ResultPanel
getResultsVector() - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
get the resultsVector
getResultsVector() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
get the resultsVector
getReturnDocList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the return document types as defined in the <returndoctype> tag in the pathquery dtd.
getReturnFieldList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the extended return fields as defined in the <returnfield> tag in the pathquery dtd.
getRight() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getRolloverSmallIcon() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the *rollover* small Icon to be displayed on toolbar buttons
getRolloverTextLabel() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the *rollover* text label to be displayed on toolbar buttons (mainly used for HTML text, where only the color or font face changes)
getRoot() - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Gets the root Node for this DOM
getRoot() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
getRootEditor() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getRootNodeID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the root node id of this node
getRowCount() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getRowCount() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
returns the total number of rows in the list
getRowCount() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
getRowCount() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
getRowCount() - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Return the number of records in this result set
getRowCount() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the number of records in this result set
getRowHeight() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the correct row height for table rows
getSIUnits() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
from the eml unit dictionary, gets all the units that are the SI units of some unit tpye
getSearchLocal() - Method in class edu.ucsb.nceas.morpho.query.Query
determine if we should search locally
getSearchMetacat() - Method in class edu.ucsb.nceas.morpho.query.Query
determine if we should search metacat
getSearchMode() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
get the searchmode parameter
getSearchMode() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
return the value of the combobox which contains the search mode (i.e.
getSearchMode() - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
return the value of the combobox which contains the search mode (i.e.
getSecondImportMap() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getSelectedColumns() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
getSelectedEntityIndex() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
Function to retrieve the selected entity Index
getSelectedId() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the selectedId
getSelectedRowIndex() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
returns the index of the currently-selected row, or -1 if none selected
getSelectedRowList() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
returns the List containing the objects in the currently-selected row, or null if none selected
getSelectedRows() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
returns an array of Lists containing the objects in the currently-selected rows, or null if none selected
getSeparatorPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the separator position for this action
getServiceProvider(Class) - Method in class edu.ucsb.nceas.morpho.plugins.ServiceController
This method is called by plugins to get a reference to an object that implements a particular interface
getSessionCookie() - Method in class edu.ucsb.nceas.morpho.Morpho
Gets the SessionCookie attribute of the Morpho object
getShowDataView() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get the show data view
getSinglePointPanel() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
Function returns a JPanel for selecting a single point of time
getSiteList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the site fields as defined in the <site> tag in the pathquery dtd.
getSize() - Method in class edu.ucsb.nceas.morpho.util.ObjectCache
get the current size of the cache
getSmallIcon() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the small Icon to be displayed on menus
getSortDirection() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get sort direction
getSorted() - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Get the table if sorted or not
getSource() - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
getSource() - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
getSouth() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getSslStatus() - Method in class edu.ucsb.nceas.morpho.Morpho
Determines if the framework is using an ssl connection
getStandardFormOfUnitType(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
getStatusBar() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Get the StatusBar to update its status
getStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Get the stored state change event.
getStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Get the stored state change event.
getStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the stored state change event.
getStoredStateChangeEvent() - Method in interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent
Get the stored state change event.
getStringArrayAsString(String[]) - Static method in class edu.ucsb.nceas.morpho.util.IOUtil
Given an array of String objects, returns the array elements as a single string, formatted as a "list" for printing to command line or logging
getStringFromFile(File) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
returns the string representation of a file
getSubject() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
get the subject of this triple
getSubtitle() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
gets the subtitle for this UI page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
gets the subtitle for this UI page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
gets the subtitle for this wizard page
getSubtitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
gets the subtitle for this wizard page
getSubtree(String, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns cloned root Node of subtree identified by genericName String and int index; returns null if not found NOTE: the cloned subtree is a new node.
getSubtreeAtReference(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns cloned root Node of subtree identified by the passed unique String refID; returns null if not found
getSubtreeAtReference(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
returns cloned root Node of subtree identified by the passed unique String refID; returns null if not found
getSubtreeAtReference(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
returns cloned root Node of subtree identified by the passed unique String refID; returns null if not found
getSubtreeAtReferenceNoClone(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns pointer to root Node of subtree identified by the passed unique String refID; returns null if not found
getSubtreeAtReferenceNoClone(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
returns pointer to root Node of subtree identified by the passed unique String refID; returns null if not found
getSubtreeAtReferenceNoClone(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
returns pointer to root Node of subtree identified by the passed unique String refID; returns null if not found
getSubtreeNoClone(String, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns root Node of subtree identified by genericName String and int index; returns null if not found
getSubtreeRootNodeName() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
get referenced id string
getSubtrees(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns a List of cloned root Nodes of subtrees identified by genericName String; returns null if not found NOTE: the cloned subtrees are new nodes.
getSubtreesThatReference(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns a List of pointers to subtrees that reference (the subtree identified by) the passed refID.
getSubtreesThatReference(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
returns a List of pointers to subtrees that reference (the subtree identified by) the passed refID.
getSubtreesThatReference(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
returns a List of pointers to subtrees that reference (the subtree identified by) the passed refID.
getSummaryText() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
gets summary text that will be shown on the final page of the wizard
getSupportedMIMETypesForEntity(short) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
given an entityType, returns an OrderedMap whose keys contain the human-readable display names for all the allowable MIME types (for the given entity type), and whose corresponding values are the actual MIME types themselves.
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
 
getSurrogate() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
 
getSynchronizeVector() - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Method to get synchorinze vector
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellEditor
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.query.ImageRenderer
return a JLable as compent
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.query.ToolTippedTextRenderer
Return self as rendering components
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.util.SortableTableHeaderCellRenderer
Method to return table cell render
getTableModelEvent() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
getTableName() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
Function to retrieve the selected table name from where the enumerated codes are imported.
getTablePanel() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get table panel
getTagName() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the name of this node
getTarget() - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
getTaxonHierarchyTillIndex(int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
getTaxonRank() - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
return the value of the combobox which contains the taxonomic rank (i.e.
getTaxonSynonyms(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Look up the synonyms of a taxon from ITIS, and return the list of names
getTaxonomicNodeList() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
gets a list of taxonomic nodes
getTemporalNodeList() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
gets a list of temporal nodes
getText() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
gets the HTML representation of the attribute values The HTML text references the entity.css file
getTextFlag() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get text flag
getTextLabel() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the text for the display label
getTitle() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method to get the DataPackage title
getTitle() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
gets the title for this UI page
getTitle() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
gets the title for this UI page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
gets the title for this wizard page /** gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
gets the title for this wizard page /** gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
gets the title for this wizard page
getTitle() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
gets the title for this wizard page
getTitleState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
returns state of Title checkbox
getToolTipText(MouseEvent) - Method in class edu.ucsb.nceas.morpho.query.ToolTippedSortableJTable
In order to only show tool tion of the cell which is elided, getToolTipText will be overwritten
getToolTipText() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the text for the tooltip
getToolbarPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the position of this action on the toolbar.
getTop() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getTransformerProperty(String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to get the transformer property value corresponding to the passed key
getTransformerProperty(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to get the transformer property value corresponding to the passed key
getTransformerProperty(String) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Gets the String value of the Property corresponding to the key passed in
getTransformerPropertyNames() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Gets an Enumeration containing the names (keys of all the properties to be set for the transformer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.ucsb.nceas.morpho.editor.XMLTreeCellRenderer
required method for a TreeCellRenderer uses icon in userobject for each nodeinstead of an icon which is based on whether node is leaf or branch.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeCellRenderer
required method for a TreeCellRenderer uses icon in userobject for each nodeinstead of an icon which is based on whether node is leaf or branch.
getTreeFromDocument(Document) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
getTriple() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple as a vector of strings
getTripleFileDom() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the dom representation of the triple file.
getTriples() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
gets the triplesCollection created by this object
getTriples() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
returns the TripleCollection of all of the triples in this document
getTriplesFile() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
gets the file that contains the package information.
getUniqueID() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
gets a String id that is guaranteed to be unique within the current document (ie document scope).
getUniqueID() - Static method in class edu.ucsb.nceas.morpho.util.UISettings
gets a String id that is guaranteed to be unique within the current document (ie document scope).
getUnitDictionaryBasicUnitTypes() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
from the eml unit dictionary, gets only the fundamental unitTypes
getUnitDictionaryCustomUnitTypes() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getUnitDictionaryUnitTypes() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
from the eml unit dictionary, gets all the unitTypes (both fundamental and derived)
getUnitDictionaryUnitsOfType(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
getUnitDictionaryUnitsOfType(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
from the eml unit dictionary, gets all the units of the given unitType
getUserName() - Method in class edu.ucsb.nceas.morpho.Morpho
Get the username associated with this framework
getValue() - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Method to get cell value
getValue(String) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getValue(String) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getValue() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Get the value produced by the worker thread, or null if it hasn't been constructed yet.
getValue() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
get the Value parameter
getValue() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
get the text that is to be seached for.
getValue() - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
get the text that is to be seached for.
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getValueAt(JTable, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
getValueAt(JTable, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
getValueAt(Object, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
getValueAt(Object, int) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel
Returns the value to be displayed for node node, at column number column.
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Determine the value of a column by its row and column index
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Determine the value of a column by its row and column index
getValuesForPath(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
 
getVector() - Method in class edu.ucsb.nceas.morpho.query.SynchronizeVector
The synchronized method to get Vector and reset contentVector to empty.
getWest() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getXPathValsMap() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
Get OrderedMap of xpath/value pairs
getXPathValue(String) - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
getXSLTStylesheetReader(String) - Method in interface edu.ucsb.nceas.morpho.plugins.XSLTResolverInterface
method to return a Reader object, which will provide access to a character-based XSLT stylesheet.
getXSLTStylesheetReader(String) - Method in class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin
Required by XSLTResolverInterface: method to return a Reader object, which will provide access to a character-based XSLT stylesheet.
grammar - Variable in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
the specific grammar value; i.e.
grammarType - Variable in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
specifies the general type of the grammar used to specify the schema; currently, the allowed types are "publicID", "systemID", "namespace", "rootname", and "unknown"

H

HASDATA - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
HEADER_BOTTOMLINE_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
HEX_VALUE_SPACE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HEX_VALUE_TAB - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HISTORY_BACK_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
descriptive constant used in ActionEvents generated by the display Signifies that user has requested the previous document from History
HREF_PATH_EXTENSION_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold path extension for href links in triples.
HTMLBrowser - class edu.ucsb.nceas.morpho.framework.HTMLBrowser.
This class is a 'quick and dirty' HTML browser written in Java.
HTMLBrowser() - Constructor for class edu.ucsb.nceas.morpho.framework.HTMLBrowser
Creates a new instance of JFrame1 with the given title.
HTMLBrowser(String) - Constructor for class edu.ucsb.nceas.morpho.framework.HTMLBrowser
Creates a new instance of JFrame1 with the given title.
HTMLBrowser(MorphoFrame, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.HTMLBrowser
 
HTMLPanel - class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel.
Plugin that builds a display panel to display metadata.
HTMLPanel(MetaDisplayInterface) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
constructor
HTMLPanel(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
constructor
HTML_EXAMPLE_FONT_CLOSING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HTML_EXAMPLE_FONT_OPENING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HTML_FONT_OPENING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HTML_NO_TABLE_CLOSING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HTML_NO_TABLE_OPENING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HTML_TABLE_LABEL_CLOSING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HTML_TABLE_LABEL_OPENING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
HYPERLINK_FONT_HTML_CLOSETAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html closing tags for font on hyperlink urls
HYPERLINK_FONT_HTML_OPENTAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html opening tags for font on hyperlink urls
HYPERLINK_FONT_OVER_HTML_CLOSETAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html closing tags for font on hyperlink urls during mouseover
HYPERLINK_FONT_OVER_HTML_OPENTAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html opening tags for font on hyperlink urls during mouseover
HeadResultSet - class edu.ucsb.nceas.morpho.query.HeadResultSet.
A HeadResultSet encapsulates the list of results returned from either a local query or a Metacat query, but only presents the most recent revision of a document as part of the Table Model.
HeadResultSet(Query, String, InputStream, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.HeadResultSet
Construct a HeadResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
HeadResultSet(Query, String, Vector, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.HeadResultSet
Construct a HeadResultSet instance from a vector of vectors; for use with LocalQuery
HeaderPanel - class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel.
Plugin that builds a display panel to display metadata.
HeaderPanel(MetaDisplay) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
constructor
HelpCommand - class edu.ucsb.nceas.morpho.framework.HelpCommand.
Class to handle help command
HelpCommand() - Constructor for class edu.ucsb.nceas.morpho.framework.HelpCommand
Constructor of HelpCommand
HelpMetadataIntroCommand - class edu.ucsb.nceas.morpho.framework.HelpMetadataIntroCommand.
 
HelpMetadataIntroCommand() - Constructor for class edu.ucsb.nceas.morpho.framework.HelpMetadataIntroCommand
 
History - class edu.ucsb.nceas.morpho.plugins.metadisplay.History.
A history implementation to wrap the underlying data structure
History() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.History
constructor
History(HistoryItem) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.History
constructor
HttpMessage - class edu.ucsb.nceas.morpho.framework.HttpMessage.
This class includes code to handle 'cookies' by looking at request and response headers.
HttpMessage(URL) - Constructor for class edu.ucsb.nceas.morpho.framework.HttpMessage
 
HyperlinkButton - class edu.ucsb.nceas.morpho.util.HyperlinkButton.
This class extends JButton to provide something that looks more like an HTML-hyperlink
HyperlinkButton(GUIAction) - Constructor for class edu.ucsb.nceas.morpho.util.HyperlinkButton
Constructor
handleEvent(Event) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
handleStateChange(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method implements from StateChangeListener.
handleStateChange(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Handle a state change.
handleStateChange(StateChangeEvent) - Method in interface edu.ucsb.nceas.morpho.util.StateChangeListener
This method is called if there is a change in the state of the application.
hasDataFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
hasMutipleVersions() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Method to determine if the this pakcage has mutiple versions
hiliteComponent(JComponent) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
ht - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
ht - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
htnodes - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
htnodes - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
hyperlinkUpdate(HyperlinkEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
 
hyperlinkUpdate(HyperlinkEvent) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame
 

I

ID_TO_GET_GENERIC_STYLESHEET - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used by the transform() method to get the schemaLocation (if one has been defined) from the Document root node
IGNORE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
IMPORT_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
INITIALFRAMENAME - Static variable in class edu.ucsb.nceas.morpho.Morpho
Constant of initial morpho frame name
INIT_SCRN_DATA_PANEL_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCRN_LEFT_PANELS_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
background color of the 3 panels on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_LABELDIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
size of the "Change Profile" and "Password" labels on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
# pixels padding around & between the 3 panels on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_PICKLISTDIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
size of the "Change Profile" and "Password" picklists (JComboBoxes) on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_TITLE_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
background color of the title bars on the 3 panels to the left of the initial screen
INIT_SCRN_LEFT_PANELS_TITLE_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Dims in pixels for each of 3 panels on the left side of initial screen
INIT_SCRN_LEFT_PANELS_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Width in pixels for each of 3 panels on the left side of initial screen
INIT_SCRN_LOGIN_PANEL_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCRN_MAIN_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
background color of the main part of the initial screen
INIT_SCRN_PANELS_DATA_TITLE_TEXT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html tags and text for title bar on the "Data" panel to the left of the initial screen
INIT_SCRN_PANELS_LOGIN_TITLE_TEXT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html tags and text for title bar on the "Login" panel to the left of the initial screen
INIT_SCRN_PANELS_PROFILE_TITLE_TEXT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html tags and text for title bar on the "Profile" panel to the left of the initial screen
INIT_SCRN_PANELS_TITLE_CLOSE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
common to the above 3: closing html tags and text for title bar on the panel to the left of the initial screen
INIT_SCRN_PROFILE_PANEL_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_BACKGROUND - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LINKBUTTON_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
size of the hyperlink buttons on the left side of the initial screen
INIT_SCR_LOGGEDOUT_STATUS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGGED_IN_MESSAGE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGGED_IN_STATUS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGIN_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGIN_HEADER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGIN_MESSAGE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_PANEL_LITE_FONT_CLOSE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
closing html tags for light-value text in panels to the left of the initial screen
INIT_SCR_PANEL_LITE_FONT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
opening html tags for light-value text in panels to the left of the initial screen
INIT_SCR_PANEL_TITLE_HILITE_FONT_CLOSE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
opening html tags for highlighted text in title bars on panel to the left of the initial screen
INIT_SCR_PANEL_TITLE_HILITE_FONT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
opening html tags for highlighted text in title bars on panel to the left of the initial screen
INLINE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
INTRODUCTION - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
Page IDs of the pages in the DataPackageWizard We can request a particular page in the wizard through the getPage() method by passing the appropriate page ID.
IOUtil - class edu.ucsb.nceas.morpho.util.IOUtil.
General static utilities for IO operations
ISLOCALINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of islocal in resultsVector
ISMETACATINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of ismetacat in resultsVector
ImageRenderer - class edu.ucsb.nceas.morpho.query.ImageRenderer.
Renders the contents of a table image cell as a JLable with icon
ImageRenderer() - Constructor for class edu.ucsb.nceas.morpho.query.ImageRenderer
Create the renderer with appropriate formatting options set
ImportDataCommand - class edu.ucsb.nceas.morpho.datapackage.ImportDataCommand.
Class to handle import data file command
ImportDataCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.ImportDataCommand
Constructor of Import data command
ImportWizard - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard.
 
ImportWizard(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
InitialScreen - class edu.ucsb.nceas.morpho.framework.InitialScreen.
A panel that contains the initial welcome screen.
InitialScreen(Morpho, MorphoFrame) - Constructor for class edu.ucsb.nceas.morpho.framework.InitialScreen
 
InsertColumnCommand - class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand.
Class to handle insert a cloumn command
InsertColumnCommand(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
Constructor of Import data command
InsertRowCommand - class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand.
Class to handle insert a row command
InsertRowCommand(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
Constructor of Import data command
IntervalRatioPanel - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.IntervalRatioPanel.
 
IntervalRatioPanel(AbstractUIPage) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.IntervalRatioPanel
Constructor
Interval_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
Interval_xPath_rel - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
Introduction - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction.
 
Introduction() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
id - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
ignorableWhitespace(char[], int, int) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
ignoreConsecutiveDelimiters(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
returns boolean indicating whether repeated delimiters should be ignored
ignoreConsecutiveDelimiters(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
no tag in eml2.0 for this information it is being put in additionalMetadata until a new version of eml is released
ignoreConsecutiveDelimiters(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
 
importCanceled() - Method in interface edu.ucsb.nceas.morpho.plugins.TextImportListener
this method handles canceled editing
importCanceled() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
TextImportListener interface this method handles canceled editing
importComplete(OrderedMap) - Method in interface edu.ucsb.nceas.morpho.plugins.TextImportListener
This method is called when editing is complete
importComplete(OrderedMap) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
TextImportListener interface This method is called when editing is complete
incChildNum() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
increase childNum when new child for the node is created
incRev(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
returns an id with an incremented id.
incRev(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
parses id and adds a revision number to it.
incRevInTriples(File, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
 
incRevInTriples(File, Vector, Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
searches an xml file for triples.
indexOfRow - Variable in class edu.ucsb.nceas.morpho.query.CellComparator
 
init() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
init() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Initialization code which collects information about the data from various metadata modules associated with the entity to be displayed
init(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
init(File) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
init(File, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
init() - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
init() - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
init() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
init() - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to initialize
initDoc(Morpho, String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
The initialization routine for DocFrame; this method creates a secondary thread where the input XML string is parsed and turned into an editable document.
initDoc(Morpho, Node, String, String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
 
initDoc(Morpho, Document, String, String, String, int) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
 
initEmpty(String[], int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
initialId - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
The plugin must store a reference to the Morpho application in order to be able to call the services available through the framework.
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
The plugin must store a reference to Morpho in order to be able to call the services available through the framework.
initialize(Morpho) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
Initialize the single instance of the UIController, creating it if needed.
initialize(Morpho) - Method in interface edu.ucsb.nceas.morpho.plugins.PluginInterface
This method is called after the Plugin has been created in order to allow the plugin a chance to initialize variables, create menus and toolbars, and store a reference to the framework.
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Required by PluginInterface; called automatically at runtime
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Required by PluginInterface; called automatically at runtime
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin
Required by PluginInterface; called automatically at runtime
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin
Required by PluginInterface; called automatically at runtime
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
The plugin must store a reference to the Morpho in order to be able to call the services available through the framework.
initializeLogging(ConfigXML) - Static method in class edu.ucsb.nceas.morpho.Morpho
Set up the logging system during startup
insert(String, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Inserts another node before the first element with the name contained in 'key', otherwise appends it to the end of the config file (last element in root node)
insertAttribute(int, Attribute, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method inserts an attribute at the indexed position in the indexed entity
insertColumn(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
add a column after the last current column new column is filled with spaces
insertCoverage(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
insert a coverage subtree (geographic, temporal, or taxonomic) under the package level coverage node 'covSubtree' is assumed to be a DOM subtree of the proper type to be added under a coverage node
insertElementAt(Serializable, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
insertEntity(Entity, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method inserts an entity in the DOM at the indexed position
insertIdInFile(File, String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
inserts a documents id into a specified path in the document.
insertObjectIntoArray(Object[], Object, Object[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
insertObjectIntoArray(Object[], Object, Object[]) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
insertRow(int, Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
insert a row at indicated position vec is assumed to be a Vector of strings
insertString(int, String, AttributeSet) - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField.NoDelimiterDocument
 
insertSubtree(String, Node, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
inserts subtree rooted at Node, at location identified by genericName String and int index.
interrupt() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
A new method that interrupts the worker thread.
isCaseSensitive() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
determine if the QueryTerm is case sensitive
isCellEditable(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
isCellEditable(EventObject) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
isCellEditable(Object, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
By default, make the column with the Tree in it the only editable one.
isCellEditable(Object, int) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel
Indicates whether the the value for node node, at column number column is editable.
isCellEditable(int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
isCheckbox() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
isChoice() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
isConnected() - Static method in class edu.ucsb.nceas.morpho.Morpho
Determines if the framework has a valid login
isCreateChoice() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
 
isCurrentImportNewTable() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
isCustomUnit(String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
isDataFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
isDataFileText(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
isDataPackageInLocal(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Method to determine a data package which in a morpho frame if is in local
isDataPackageInLocal(MorphoFrame) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Method to determine a data package which in a morpho frame if is in local
isDataPackageInNetwork(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Method to determine a data package which in a morpho frame if is in network
isDataPackageInNetwork(MorphoFrame) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Method to determine a data package which in a morpho frame if is in network
isDirty() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
 
isDone() - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
A method to see if the parsing is done
isEmpty() - Method in class edu.ucsb.nceas.morpho.query.SynchronizeVector
Method to see if this vector is empty
isEnabled() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Gets the boolean indicating whether the customlist is enabled or not
isFloat(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
isFocusTraversable() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
 
isImportNeeded() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
isInObjectCollection(String) - Method in class edu.ucsb.nceas.morpho.util.ObjectCache
 
isLeaf(Object) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
isLeaf(Object) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
isNewCustomUnit(String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
isQueryMetacatCancelled() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
isSearchStarted() - Method in class edu.ucsb.nceas.morpho.query.QueryDialog
determine whether the query should be executed
isSelected() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
isWizardRunning() - Method in class edu.ucsb.nceas.morpho.framework.UIController
called by DataPackageWizardPlugin whenever wizard starts running, and is passed a temporary AbstractDataPackage that is used to store wizard data (for references use) - this ADP will be returned by any calls to getCurrentAbstractDataPackage() while the wizard is running
isXMLAttribute() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 

J

JTreeTable - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.
This example shows how to create a simple JTreeTable component, by using a JTree as a renderer (and editor) for the cells in a particular column in the JTable.
JTreeTable(TreeTableModel) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable
 
JTreeTable.TreeTableCellEditor - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellEditor.
 
JTreeTable.TreeTableCellEditor() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellEditor
 
JTreeTable.TreeTableCellRenderer - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellRenderer.
 
JTreeTable.TreeTableCellRenderer(TreeModel) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellRenderer
 

K

KEYWORDS - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
KEYWORDS - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
KEYWORDSINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of keywords in resultsVector
KEYWORDS_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
Keywords - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords.
 
Keywords() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
 
KeywordsPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage.
 
KeywordsPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
 

L

LASTMODIFIED - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
LIST_BUTTON_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
LIST_BUTTON_DIMS_SMALL - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
LOCAL - Static variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
used to signify that this package is located locally
LOCAL - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
used to signify that this package is located locally
LOCAL - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
LOCALTOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
LOGOUT_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
LOGOUT_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
LOGOUT_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
LiveMapPanel - class edu.ucsb.nceas.morpho.query.LiveMapPanel.
A map selection applet.
LiveMapPanel() - Constructor for class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
LiveMapPanel(boolean) - Constructor for class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
LocalDocTypesPanel - class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel.
 
LocalDocTypesPanel() - Constructor for class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
Default constructor.
LocalDocTypesPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
LocalQuery - class edu.ucsb.nceas.morpho.query.LocalQuery.
LocalQuery is a class designed to execute a query defined in an XML document that follows the PathQuery DTD.
LocalQuery(Query, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.LocalQuery
Basic Constuctor for the class
LocalToNetworkCommand - class edu.ucsb.nceas.morpho.query.LocalToNetworkCommand.
Class to handle upload a package to network command
LocalToNetworkCommand(OpenDialogBox, JDialog, MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.LocalToNetworkCommand
Constructor of LocalToNetworkCommand in dialog
LockedPanel - class edu.ucsb.nceas.morpho.editor.LockedPanel.
Locked panel is an example of a very simple plug-in panel to be used by the XML editor.
LockedPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.LockedPanel
 
Log - class edu.ucsb.nceas.morpho.util.Log.
The Log is a utility class for logging messages to stdout, stderr, a file, or a dialog box.
LoginClientInterface - interface edu.ucsb.nceas.morpho.framework.LoginClientInterface.
Interface used by LoginCommand to do callbacks to login client that called the LoginCommand.
LoginCommand - class edu.ucsb.nceas.morpho.framework.LoginCommand.
Class to handle login
LoginCommand(Morpho, LoginClientInterface) - Constructor for class edu.ucsb.nceas.morpho.framework.LoginCommand
Constructor
launchEditorAtSubtreeForCurrentFrame(String, int) - Method in class edu.ucsb.nceas.morpho.framework.UIController
launches the XML tree editor, rooted at the subtree node denoted by the passed string and index, to edit the datapackage associated with the current MorphoFrame
length() - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
listPanel - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
 
listenerList - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
listenerList - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
load(String, String, Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This abstract method loads a datapackage from metacat or the local file system based on an identifier.
load(String, String, Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
 
load(String, String, Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
 
loadCustomUnits() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
loadNewPage(Object) - Method in class edu.ucsb.nceas.morpho.framework.HTMLBrowser
 
loadSavedQueries() - Method in class edu.ucsb.nceas.morpho.query.SaveQueryCommand
Load the saved queries into the Search menu so that the user can launch any queries they saved from previosu sessions.
loadSavedQueries(Morpho) - Static method in class edu.ucsb.nceas.morpho.query.SaveQueryCommand
Load the saved queries into the Search menu so that the user can launch any queries they saved from previosu sessions.
localIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing local storage.
location - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
logIn() - Method in class edu.ucsb.nceas.morpho.Morpho
Log into metacat.
logOut() - Method in class edu.ucsb.nceas.morpho.Morpho
Log out of metacat
logOutExit() - Method in class edu.ucsb.nceas.morpho.Morpho
Log out of metacat when exiting.
lookupResultsVectorIndex(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Lookup an array to find resultsVector index for header index header index resultVector index 0 PACKAGEICONEX(0) 1 TITLEINDEX(1) 2 DOCIDINDEX(6) 3 SURNAMEINDEX(2) 4 KEYWORKDINDEX(3) 5 UPDATEDATEINDEX(5) 6 ISLOCALINDEX(9) 7 ISMETACATINDEX(10)
lookupResultsVectorIndex(String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
 

M

MAX_WINDOW_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
MAX_WINDOW_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
MEASUREMENTSCALE_DATETIME - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
MEASUREMENTSCALE_INTERVAL - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
MEASUREMENTSCALE_NOMINAL - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
MEASUREMENTSCALE_ORDINAL - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
MEASUREMENTSCALE_RATIO - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
 
MENU_PATH - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
METACAT - Static variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
used to signify that this package is located on a metacat server
METACAT - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
used to signify that this package is located on a metacat server
METACATTOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
METADATA_MENU_LABEL - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
METAVIEWER_BEGIN_EDIT - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that user has issued a command to edit the metadata in the MetaData Viewer.
METAVIEWER_HIDE_BUTTON_PRESSED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the "Hide" button has been pressed in the MetaData Viewer
METAVIEWER_HISTORY_BACK - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that user has requested the previous document from History in the MetaData Viewer.
METAVIEWER_NAVIGATION - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a navigation event has been triggered in the MetaData Viewer.
METAVIEW_BUTTON_INSETS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
insets for nuttons in metaviewer - order is (TOP, LEFT, BOTTOM, RIGHT)
METHODS - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
METHODS_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
MeasurementScale_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
MetaDisplay - class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay.
Top-level controller/Mediator class for an instance of a metadata display panel.
MetaDisplay() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
constructor
MetaDisplayFactoryInterface - interface edu.ucsb.nceas.morpho.plugins.MetaDisplayFactoryInterface.
This interface provides methods for initializing, displaying, updating and registering as a listener for a Component that styles XML and displays the results
MetaDisplayInterface - interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface.
This interface provides methods for initializing, displaying, updating and registering as a listener for a Component that styles XML and displays the results
MetaDisplayPlugin - class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin.
Plugin that builds a display panel to display metadata.
MetaDisplayPlugin() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
 
MetaDisplayUI - class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI.
Display component used by the MetaDisplay class to display: an embedded header panel containing navigation controls, and an embedded HTML display showing the results of styling the XML metadata document usig XSLT.
MetaDisplayUI(MetaDisplay) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
constructor
MetacatDataStore - class edu.ucsb.nceas.morpho.datastore.MetacatDataStore.
implements and the DataStoreInterface for accessing files on the Metacat
MetacatDataStore(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Constructor to create this object in conjunction with a ceartain morpho.
MetacatUploadException - exception edu.ucsb.nceas.morpho.datastore.MetacatUploadException.
This exception is thrown when an error occurs during communication with the metacat server.
MetacatUploadException(String) - Constructor for class edu.ucsb.nceas.morpho.datastore.MetacatUploadException
 
MetadataObject - class edu.ucsb.nceas.morpho.datapackage.MetadataObject.
class that represents a data package.
MetadataObject() - Constructor for class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
MetadataObject(Node) - Constructor for class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
MetadataObject(Node, String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
MetadataObject(Node, Node) - Constructor for class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
MetadataObject(Node, Node, String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
Methods - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods.
 
Methods() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
 
MethodsPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage.
 
MethodsPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
 
MissingValueCode_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
ModalDialog - class edu.ucsb.nceas.morpho.framework.ModalDialog.
 
ModalDialog(AbstractUIPage, Frame, int, int) - Constructor for class edu.ucsb.nceas.morpho.framework.ModalDialog
 
ModalDialog(AbstractUIPage, Frame, int, int, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.ModalDialog
 
Morpho - class edu.ucsb.nceas.morpho.Morpho.
Morpho is the main entry point for the Morpho application.
Morpho(ConfigXML) - Constructor for class edu.ucsb.nceas.morpho.Morpho
Creates a new instance of Morpho
Morpho.CreateNewProfileCommand - class edu.ucsb.nceas.morpho.Morpho.CreateNewProfileCommand.
 
Morpho.CreateNewProfileCommand() - Constructor for class edu.ucsb.nceas.morpho.Morpho.CreateNewProfileCommand
 
MorphoFrame - class edu.ucsb.nceas.morpho.framework.MorphoFrame.
The MorphoFrame is a Window in the Morpho application containing the standard menus and toolbars.
MorphoPrefsDialog - class edu.ucsb.nceas.morpho.framework.MorphoPrefsDialog.
A simple Morpho Preferences Dialog
MorphoPrefsDialog(Frame, Morpho) - Constructor for class edu.ucsb.nceas.morpho.framework.MorphoPrefsDialog
 
MultipartForm - class edu.ucsb.nceas.morpho.framework.MultipartForm.
This class represents name/value pairs and files in a byte array using the multipart/form-data encoding.
MultipartForm(NVPair[], NVPair[], FilenameMangler) - Constructor for class edu.ucsb.nceas.morpho.framework.MultipartForm
Create a new form with form data and files using the multipart/form-data encoding and use the given FilenameMangler to alter filenames before encoding.
MultipartForm(NVPair[], NVPair[]) - Constructor for class edu.ucsb.nceas.morpho.framework.MultipartForm
Create a new form with form data and files using the multipart/form-data encoding.
MyURIResolver - class edu.ucsb.nceas.morpho.datapackage.MyURIResolver.
 
MyURIResolver() - Constructor for class edu.ucsb.nceas.morpho.datapackage.MyURIResolver
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.Morpho
The entry point for this application.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.DataPackageFactory
This is a static main method configured to test the class by creating a datapackage from a 'test' file with the id "jscientist.7.1".
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.EMLConvert
Method main
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
command line test method.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
Test method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Test method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.editor.DocFrame
usual Main method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.framework.HTMLBrowser
The entry point for this application.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.framework.SplashFrame
Test the frame
main(String[]) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.TextImportWizardEml2
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
This is a static main method configured to test the class
main(String[]) - Static method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Main method can be used for testing this plugin.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.query.LocalQuery
Main routine for testing
main(String[]) - Static method in class edu.ucsb.nceas.morpho.query.Query
Main routine for testing
main(String[]) - Static method in class edu.ucsb.nceas.morpho.util.DBValidate
main method for testing
makeCheckBox(String, boolean) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeCheckBoxPanel(String[], int, ItemListener) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeContainerDialog(JPanel, ActionListener, ActionListener) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
Function that creates a container dialog for a given panel.
makeContainerDialog(JPanel, ActionListener, ActionListener, String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
Function that creates a container dialog for a given panel.
makeContainerDialogNoParent(JPanel, ActionListener, ActionListener) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeContainerDialogNoParent(JPanel, ActionListener, ActionListener, String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
Function that creates a container dialog for a given panel.
makeDefaultSpacer() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeHTMLLabel(String, int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeHTMLLabel(String, int, boolean) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeHalfSpacer() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeJButton(String, ActionListener) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeJButton(String, ActionListener, Dimension) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeLabel(String, boolean) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeLabel(String, boolean, Dimension) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeList(String[], Object[], int, boolean, boolean, boolean, boolean, boolean, boolean) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeOneLineTextField() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeOneLineTextField(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makePanel() - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makePanel(int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makePickList(String[], boolean, int, ItemListener) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeRadioPanel(String[], int, ActionListener) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeTextArea(String, int, boolean) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
makeVerticalPanel(int) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
merge(ResultSet) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Merge a ResultSet onto this one using the docid as the join column
merge(Vector) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Merge a ResultSet onto this one using the docid as the join column
merge(ResultSet) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Merge a ResultSet onto this one using the docid as the join column
merge(Vector) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Merge a vector onto this one using the docid as the join column
metacatDataStore - Variable in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
metacatIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing metacat storage.
metadataNode - Variable in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
A DOM Node is the basic datastructure.
metadataPathNode - Variable in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
paths is designed to provide a 'map' between generic paths and specific locations in a tree (Node) structure.
middlePanel - Variable in class edu.ucsb.nceas.morpho.framework.ModalDialog
 
mouseClicked(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseClicked(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Mouse click event handler
mouseEntered(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseEntered(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mouseExited(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseExited(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mousePressed(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mousePressed(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mouseReleased(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseReleased(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mouseUp(Event, int, int) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
moveDownAction - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
moveUpAction - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 

N

NAMESPACE_FOR_SCHEMA_LOCATION - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used by the transform() method to get the schemaLocation (if one has been defined) from the Document root node
NAVIGATION_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * N O T E: THESE SHOULD BE SUPERSEDED BY THE STATE CHANGE EVENT CONSTANTS IN StateChangeEvent.java, AND THE WHOLE LISTENER SETUP SHOULD BE CHANGED TO USEW THE StateChangeMonitor...
NAV_BUTTON_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
NET - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
NEW_DATAPACKAGE_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Denotes an instance of the CreateNewDataPackageCommand object
NEW_DATAPACKAGE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_DATAPACKAGE_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_DATAPACKAGE_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_DATA_TABLE_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Denotes an instance of the ImportDataCommand object
NEW_EML200_DOCUMENT_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
NEW_PROFILE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_PROFILE_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_PROFILE_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEXT_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
NODATA - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
NONEDITABLE_BACKGROUND_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NONORDERED - Static variable in class edu.ucsb.nceas.morpho.util.SortableJTable
 
NULL - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
NUMBER_OF_STEPS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
NUMBER_OF_TAXON_RANKS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
NetworkToLocalCommand - class edu.ucsb.nceas.morpho.query.NetworkToLocalCommand.
Class to handle download a package from network command
NetworkToLocalCommand(OpenDialogBox, JDialog, MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.NetworkToLocalCommand
Constructor of NetworkToLocalCommand in dialog
NewDataFile - class edu.ucsb.nceas.morpho.datapackage.NewDataFile.
 
NewDataFile(Frame) - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NewDataFile() - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NewDataFile(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NewDataFile(Frame, DataPackage, Morpho, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NodeInfo - class edu.ucsb.nceas.morpho.editor.NodeInfo.
NodeInfo is a class used as a UserObject for a specialized JTree model.
NodeInfo(String) - Constructor for class edu.ucsb.nceas.morpho.editor.NodeInfo
creates a new NodeInfo object with the indicated name.
Nominal_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
Nominal_xPath_rel - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
NullArgumentException - exception edu.ucsb.nceas.morpho.exception.NullArgumentException.
This exception is thrown by a method which cannot deal gracefully with receiving a null argument - i.e.
NullArgumentException(String) - Constructor for class edu.ucsb.nceas.morpho.exception.NullArgumentException
 
newDataFile(String, InputStream) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
newDataFile(String, File) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
method to create a new data file on metacat.
newFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
newFile(String, Reader) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
create a new file with an id of name in the datastore and return a File object that represents it.
newFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
returns a File object in the local repository.
newFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Create and save a new file to metacat using the "insert" action.
newFile(String, Reader, boolean) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
 
nextAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
The action to be executed when the "Next" button (pages 1 to last-but-one) is pressed.
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
nextPageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
node - Variable in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
node - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
node - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
nodeForRow(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
nodeMap - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
nodeMap - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
normalize(Object) - Static method in class edu.ucsb.nceas.morpho.util.XMLUtil
Normalizes the given string.
notifyStateChange(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
Notify the monitor of an application state change so that it in turn can notify all of the registered listeners of that state change.
numChoice - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 

O

OFFLINE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
OK_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
OK_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
OK_OPTION - Static variable in class edu.ucsb.nceas.morpho.framework.ModalDialog
 
ONLINE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
OPEN_DATAPACKAGE_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
Denotes an instance of the OpenDataPackageCommand object
OPEN_DATAPACKAGE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
OPEN_DATAPACKAGE_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
OPEN_DATAPACKAGE_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
OR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
ObjectCache - class edu.ucsb.nceas.morpho.util.ObjectCache.
Object cache is a caching utility which stores objects as SortReference objects.
ObjectCache() - Constructor for class edu.ucsb.nceas.morpho.util.ObjectCache
constructor
ObjectFile - class edu.ucsb.nceas.morpho.datapackage.ObjectFile.
 
ObjectFile(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
OpenDeleteDialogCommand - class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand.
Class to handle Open a dialog box command
OpenDeleteDialogCommand() - Constructor for class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand
Constructor of OpenDeleteDialogCommand
OpenDeleteDialogCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand
Constructor of OpenDeleteDialogCommand
OpenDialogBox - class edu.ucsb.nceas.morpho.query.OpenDialogBox.
A dialog box for user to open a datapakcage
OpenDialogBox(MorphoFrame, Morpho, Query) - Constructor for class edu.ucsb.nceas.morpho.query.OpenDialogBox
Construct a new instance of the query dialog
OpenDialogBoxCommand - class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand.
Class to handle Open a dialog box command
OpenDialogBoxCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand
Constructor of SearchCommand
OpenExportDialogCommand - class edu.ucsb.nceas.morpho.query.OpenExportDialogCommand.
Class to handle Open a dialog box command
OpenExportDialogCommand() - Constructor for class edu.ucsb.nceas.morpho.query.OpenExportDialogCommand
Constructor of OpenExportDialogCommand
OpenExportDialogCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenExportDialogCommand
Constructor of OpenExportDialogCommand
OpenPackageCommand - class edu.ucsb.nceas.morpho.query.OpenPackageCommand.
Class to handle open package command
OpenPackageCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Constructor of SearcCommand
OpenPreviousDialog - class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog.
 
OpenPreviousDialog(Frame) - Constructor for class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
OpenPreviousDialog() - Constructor for class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
OpenPreviousDialog(String, int, Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
OpenPreviousVersionCommand - class edu.ucsb.nceas.morpho.query.OpenPreviousVersionCommand.
Class to handle open a previous version package command
OpenPreviousVersionCommand(OpenDialogBox, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.OpenPreviousVersionCommand
Constructor of OpenPreviousVersionCommand
OpenSynchronizeDialogCommand - class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand.
Class to handle Open a synchronize (upload or download) dialog box command
OpenSynchronizeDialogCommand() - Constructor for class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand
Constructor of open synchronize dialog command
OpenSynchronizeDialogCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand
Constructor of OpenSynchronizeDialogCommand
Ordinal_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
Ordinal_xPath_rel - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.framework.ModalDialog
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
The action to be executed when the "Next" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
The action to be executed when the "Next" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
The action to be taken when 'OK' is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
The action to be executed when the "OK" button is pressed.
onAdvanceAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
The action to be executed when the "Next" button (pages 1 to last-but-one) or "Finish" button(last page) is pressed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
The action to be executed when the page is displayed.
onLoadAction() - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageSubPanelAPI
The action to be executed when the panel is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
The action to be executed when the page is loaded Here, it reloads the parties from the DOM, in case any of them are references that have been edited elsewhere
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.IntervalRatioPanel
The action to be executed when the panel is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
The action to be executed when the panel is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
The action to be executed when the page is displayed.
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
The action to be executed when the page is loaded Here, it does nothing because this is just a Panel and not the outer container
onLoadAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
The action to be executed when the page is displayed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
/** The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
The action to be executed when the "Prev" button is pressed.
onRewindAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
The action to be executed when the "Prev" button is pressed.
openAsDom(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
openAsDom(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
This method is needed by the XMLFactoryInterface In this case, null is always returned.
openAsDom(String) - Method in interface edu.ucsb.nceas.morpho.plugins.XMLFactoryInterface
method to return a DOM Document rather than a Reader Since the real purppose is to provide the source for an XSLT transform a DOM can passed instead of a Reader.
openAsInputStream(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Open a sub-element of this datapackage (for example, a Module, or a sub-tree), given its String identifier.
openAsReader(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
openAsReader(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
openAsReader(String) - Method in interface edu.ucsb.nceas.morpho.plugins.XMLFactoryInterface
method to return a Reader object, which will provide access to a character-based resource.
openDataFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Opens a file from Metacat and returns a File object that represents the metacat file.
openDataPackage(String, String, Vector, ButterflyFlapCoordinator, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
openDataPackage(String, String, Vector, ButterflyFlapCoordinator, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to open a data package that resides either locally (location=local) or on a Metacat server (location=metacat).
openEditor(String) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(Document, String, String, EditingCompleteListener, String, int) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, EditingCompleteListener, boolean) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, String, String, EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor that resides either
openEditor(String, String, String, EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xmltext and an editingCompletedListener to be notified when the editing is completed
openEditor(String, String, String, EditingCompleteListener, boolean) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xmltext and an editingCompletedListener to be notified when the editing is completed.
openEditor(String, String, String, String, String, EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xmltext and an editingCompletedListener to be notified when the editing is completed, the nodename and nodevalue parameters indicated node to be selected when documement is opened
openEditor(Document, String, String, EditingCompleteListener, String, int) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xml structure in a DOM and an editingCompletedListener to be notified when the editing is completed
openFile(String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
opens a file on metacat or local.
openFile(String, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
figures out a files location if it is not known and opens it.
openFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
openFile(String) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
open a file from a datastore with the id of name and return a File object that represents it.
openFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
opens a file with the given name.
openFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Opens a file from Metacat and returns a File object that represents the metacat file.
openHiddenNewDataPackage(AbstractDataPackage, ButterflyFlapCoordinator) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
openHiddenNewDataPackage(AbstractDataPackage, ButterflyFlapCoordinator) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
same as openNewDataPackage except the frame is notVisible
openNewDataPackage(AbstractDataPackage, ButterflyFlapCoordinator) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
openNewDataPackage(AbstractDataPackage, ButterflyFlapCoordinator) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to open a data package that resides either locally (location=local) or on a Metacat server (location=metacat).
openResultRecord(int) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Open a given row index of the result set using a delegated handler class
openResultRecord(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Open a given row index of the result set using a delegated handler class
openResultRecord(Vector) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Open a given row of the result set using a delegated handler class
openTempFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
outputfileName - Static variable in class edu.ucsb.nceas.morpho.datapackage.EMLConvert
 

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PACKAGEDATATOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
PACKAGEICONINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of package icon in resultsVector
PACKAGETOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
PACKAGE_ID_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
xsl property used to hold package id
PACKAGE_INDEX_NAME_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
xsl property used to hold package index name
PACKAGE_WIZ_FIRST_PAGE_ID - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
PACKAGE_WIZ_SUMMARY_TITLE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
PACKAGE_WIZ_SUMMARY_TITLE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
PADDING - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
PARTY_ASSOCIATED - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_ASSOCIATED_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_CITATION_AUTHOR - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_CONTACT - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_CONTACT_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_CREATOR - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_CREATOR_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_INTRO - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PARTY_PERSONNEL - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PASSWORD_LABEL_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PASTEKEY - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
PATHBAR_BOTTOM_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PATHBAR_SIDES_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PATHBAR_TOP_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
POPUPDIALOG_BUTTON_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
POPUPDIALOG_BUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
POPUPDIALOG_FOR_ATTR_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
POPUPDIALOG_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
POPUPDIALOG_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PREV_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
PROJECT - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
PULL_RIGHT_MENU - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
PackageUtil - class edu.ucsb.nceas.morpho.datapackage.PackageUtil.
This class contains static utility methods that are used throughtout the other *.morpho.datapackage.* classes.
PackageUtil() - Constructor for class edu.ucsb.nceas.morpho.datapackage.PackageUtil
 
PartyIntro - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro.
 
PartyIntro() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
 
PartyMainPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage.
 
PartyMainPage(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
Constructor - determines what type of dialog (what role):
PartyPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage.
 
PartyPage(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
Constructor - determines what type of dialog (what role):
Path - class edu.ucsb.nceas.morpho.plugins.metadisplay.Path.
A path implementation to wrap the underlying data structure
Path() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
constructor
Path(PathElementInterface) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
constructor
PathElementInterface - interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface.
This Interface is implemented by objects that may be added to a edu.ucsb.nceas.morpho.plugins.metadisplay.Path object
PersistentTableModel - class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel.
 
PersistentTableModel(PersistentVector) - Constructor for class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
PersistentTableModel(PersistentVector, Vector) - Constructor for class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
PersistentVector - class edu.ucsb.nceas.morpho.datapackage.PersistentVector.
 
PersistentVector() - Constructor for class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Constructor of PersistentVector
PluginInterface - interface edu.ucsb.nceas.morpho.plugins.PluginInterface.
All component plugins that are to be included in Morpho must implement this interface so that the services of Morpho such as menu and toolbar actions, and session control, are available to the plugin component.
PreviewCommand - class edu.ucsb.nceas.morpho.plugins.printer.PreviewCommand.
 
PreviewCommand(Morpho, PrinterPlugin) - Constructor for class edu.ucsb.nceas.morpho.plugins.printer.PreviewCommand
 
PrintCommand - class edu.ucsb.nceas.morpho.plugins.printer.PrintCommand.
 
PrintCommand(Morpho, PrinterPlugin) - Constructor for class edu.ucsb.nceas.morpho.plugins.printer.PrintCommand
 
PrintFrame - class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.
 
PrintFrame.PageableComponent - class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent.
 
PrintFrame.PageableComponent(float, float, Printable, PageFormat) - Constructor for class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
Create a java.awt.Pageable that will print a canvas over as many pages as are needed.
PrintFrame.PageableComponent() - Constructor for class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
 
PrintFrame.PrintableComponent - class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent.
 
PrintFrame.PrintableComponent(JComponent, PageFormat, Rectangle) - Constructor for class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent
Create a Pageable that can print a Swing JComponent.
PrinterInterface - interface edu.ucsb.nceas.morpho.plugins.PrinterInterface.
This Interface enables calling classes to display and be able to print a html or plain text string.
PrinterPlugin - class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin.
Plugin that provides a display panel to display HTML or plain text and allows the user to print the document
PrinterPlugin() - Constructor for class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin
 
ProfileAddedListener - interface edu.ucsb.nceas.morpho.framework.ProfileAddedListener.
Any object that is interested in the creation of new Profiles by the Morpho framework should implement this interface and register with the framework to be notified of such changes
ProfileDialog - class edu.ucsb.nceas.morpho.framework.ProfileDialog.
A graphical window for creating a new user profile with user provided information.
ProfileDialog(Morpho) - Constructor for class edu.ucsb.nceas.morpho.framework.ProfileDialog
Construct a dialog and set the framework
ProfileDialog(Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.ProfileDialog
Construct the dialog
ProgressBarThread - class edu.ucsb.nceas.morpho.util.ProgressBarThread.
 
ProgressBarThread() - Constructor for class edu.ucsb.nceas.morpho.util.ProgressBarThread
Create a new progress bar object with parentDialog as null and initialize a javax.swing.JProgressBar object.
ProgressBarThread(JDialog) - Constructor for class edu.ucsb.nceas.morpho.util.ProgressBarThread
Create a new progress bar object with parentDialog passed as parameter and initialize a javax.swing.JProgressBar object.
ProgressIndicator - class edu.ucsb.nceas.morpho.framework.ProgressIndicator.
The ProgressIndicator extends JLabel to display a progress image.
ProgressIndicator(ImageIcon, ImageIcon) - Constructor for class edu.ucsb.nceas.morpho.framework.ProgressIndicator
Creates a new instance of ProgressIndicator
Project - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project.
 
Project() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
packageDataIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing pakcage and data file
packageIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing package
pageDescriptionLabel - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
pageID - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
pageNumber - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
paint(Graphics) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellRenderer
 
paintComponent(Graphics) - Method in class edu.ucsb.nceas.morpho.framework.InitialScreen
overrides JPanel's paintComponent() method to paint graphic behind 3 panels on left of initial screen.
parseDTD() - Method in class edu.ucsb.nceas.morpho.editor.DTDTree
parses a dtd file and creates a tree of document instance
parseFile() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
parses data input string into an array of lines (Strings)
parseId(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
Parses a dotted notation id into a file path.
parseIdFromMessage(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
parses the id of a file from the message that metacat returns
parseInputStream(InputStream) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
pbt - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
populatePartiesList(CustomList, List, String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Given a UI CustomList, populates it from the nvps in the List of OrderedMap objects passed as partiesOrderedMapList
previewPreviousID() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
Looks at the String identifier that was most recently added to history, without actually removing it from history
previousAction() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
The action to be executed when the "Prev" button is pressed
print(Node) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
This method can 'print' any DOM subtree.
print(Node, PrintWriter) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
This method can 'print' any DOM subtree.
print(String, String) - Method in interface edu.ucsb.nceas.morpho.plugins.PrinterInterface
method to just print a user-provided String.
print(Graphics, PageFormat, int) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent
 
print() - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame
 
print(String, String) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin
 
print(Node, PrintWriter) - Static method in class edu.ucsb.nceas.morpho.util.XMLUtil
This method can 'print' any DOM subtree.
printDoctype(Document) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
prints out the doctype part of and xml document.
printExtendedSQL(String) - Method in class edu.ucsb.nceas.morpho.query.Query
This method prints sql based upon the <returnfield> tag in the pathquery document.
printGetDocByDoctypeSQL(String) - Static method in class edu.ucsb.nceas.morpho.query.Query
 
printPackageSQL() - Static method in class edu.ucsb.nceas.morpho.query.Query
Prints sql that returns all relations in the database.
printPackageSQL(String) - Static method in class edu.ucsb.nceas.morpho.query.Query
Prints sql that returns all relations in the database that were input under a specific docid
printPackageSQL(String, String) - Static method in class edu.ucsb.nceas.morpho.query.Query
Returns all of the relations that has a certain docid in the subject or the object.
printRelationSQL(String) - Static method in class edu.ucsb.nceas.morpho.query.Query
 
printSQL(boolean) - Method in class edu.ucsb.nceas.morpho.query.Query
create a SQL serialization of the query that this instance represents
printSQL(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
create a SQL serialization of the query that this instance represents
printSQL(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
create a SQL serialization of the query that this instance represents
processingInstruction(String, String) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
profileAdded(String) - Method in interface edu.ucsb.nceas.morpho.framework.ProfileAddedListener
This method is called if a new profile has been created
putObject(String, Object) - Method in class edu.ucsb.nceas.morpho.util.ObjectCache
 

Q

Query - class edu.ucsb.nceas.morpho.query.Query.
A Class that represents a structured query, and can be constructed from an XML serialization conforming to @see pathquery.dtd.
Query(Reader, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.Query
construct an instance of the Query class from an XML Stream
Query(String, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.Query
construct an instance of the Query class from an XML String
Query(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.Query
construct an instance of the Query class, manually setting the Query constraints rather that readin from an XML stream
QueryDialog - class edu.ucsb.nceas.morpho.query.QueryDialog.
Dialog which collects search information from user to be used to create a Query
QueryDialog(Frame, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.QueryDialog
Construct a new instance of the query dialog
QueryGroup - class edu.ucsb.nceas.morpho.query.QueryGroup.
A group of terms and other groups in a query, allowing arbitrarily nested hierarchiies that can be combined using union or intersection.
QueryGroup(String) - Constructor for class edu.ucsb.nceas.morpho.query.QueryGroup
construct a new QueryGroup
QueryPlugin - class edu.ucsb.nceas.morpho.query.QueryPlugin.
 
QueryPlugin() - Constructor for class edu.ucsb.nceas.morpho.query.QueryPlugin
Construct the query plugin.
QueryRefreshInterface - interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface.
This service allows plugins to request that the query results be refreshed when they have made a change that should affect the resultset.
QueryTerm - class edu.ucsb.nceas.morpho.query.QueryTerm.
A single term in a query, containing the path to be searched, the value to match, and any relevant search modifiers.
QueryTerm(boolean, String, String) - Constructor for class edu.ucsb.nceas.morpho.query.QueryTerm
Construct a new instance of a query term for a free text search (using the value only)
QueryTerm(boolean, String, String, String) - Constructor for class edu.ucsb.nceas.morpho.query.QueryTerm
Construct a new instance of a query term for a structured search (matching the value only for those nodes in the pathexpr)

R

REFRESH_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
REGULAR - Static variable in class edu.ucsb.nceas.morpho.query.ExportCommand
 
Ratio_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
Ratio_xPath_rel - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
ReferenceMapping - class edu.ucsb.nceas.morpho.datapackage.ReferenceMapping.
Title:
ReferenceMapping(String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.ReferenceMapping
 
ReferenceSelectionEvent - class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent.
Used when ReferencesHandler class has detected a selection event in the list of available IDs and has obtained the relevant referenced data, either from the current datapackage, or from a remote package.
ReferenceSelectionEvent() - Constructor for class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
 
ReferenceSelectionEvent(String, short, OrderedMap, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
 
ReferencesHandler - class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler.
 
ReferencesHandler(String, String[]) - Constructor for class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
constructor
ReferencesListener - interface edu.ucsb.nceas.morpho.datapackage.ReferencesListener.
 
RefreshCommand - class edu.ucsb.nceas.morpho.query.RefreshCommand.
Class to handle refresh command
RefreshCommand() - Constructor for class edu.ucsb.nceas.morpho.query.RefreshCommand
Constructor of refreshCommand There is no parameter, means it will refresh current active morpho frame
RefreshCommand(MorphoFrame) - Constructor for class edu.ucsb.nceas.morpho.query.RefreshCommand
Constructor of RefreshCommand
RefreshCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.RefreshCommand
Constructor of RefreshCommand
ResultPanel - class edu.ucsb.nceas.morpho.query.ResultPanel.
Display a ResultSet in a table view in a panel that can be embedded in a window or tab or other location
ResultPanel(OpenDialogBox, ResultSet, ResultPanelAndFrameMediator) - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanel
Construct a new ResultPanel and display the result set.
ResultPanel(OpenDialogBox, ResultSet, ResultPanelAndFrameMediator, Dimension) - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanel
Construct a new ResultPanel and display the result set.
ResultPanel(OpenDialogBox, ResultSet, int, ResultPanelAndFrameMediator, Dimension) - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanel
Construct a new ResultPanel and display the result set
ResultPanelAndFrameMediator - class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator.
This class is a mediator between components: Resultset table and open button If there is a selection in the table, open button will enable.
ResultPanelAndFrameMediator() - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
 
ResultSet - class edu.ucsb.nceas.morpho.query.ResultSet.
A ResultSet encapsulates the list of results returned from either a local query or a Metacat query.
ResultSet(Query, String, Vector, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.ResultSet
Construct a ResultSet instance from a vector of vectors; for use with LocalQuery
ResultSet(Query, String, InputStream, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.ResultSet
Construct a ResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
ResultsetHandler - class edu.ucsb.nceas.morpho.query.ResultsetHandler.
Title:
ResultsetHandler(InputStream, SynchronizeVector, Morpho, String) - Constructor for class edu.ucsb.nceas.morpho.query.ResultsetHandler
A contruct will be used in another thread
ResultsetHandler(Morpho, String) - Constructor for class edu.ucsb.nceas.morpho.query.ResultsetHandler
A constructor to set up a ContentHanler
RevertAllCommand - class edu.ucsb.nceas.morpho.datapackage.RevertAllCommand.
Class to Revert to all tabs to original data sets
RevertAllCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.RevertAllCommand
Constructor of RevertCommand
RevertAllCommand(AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.RevertAllCommand
Constructor of RevertCommand
RevertCommand - class edu.ucsb.nceas.morpho.datapackage.RevertCommand.
Class to Revert to current tab to original data sets
RevertCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.RevertCommand
Constructor of RevertCommand
RevertCommand(AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.RevertCommand
Constructor of RevertCommand
ReviseSearchCommand - class edu.ucsb.nceas.morpho.query.ReviseSearchCommand.
Class to handle search command
ReviseSearchCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.ReviseSearchCommand
Constructor of SearcCommand
RunSavedQueryCommand - class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand.
Class to handle click a saved query menu item
RunSavedQueryCommand(Query) - Constructor for class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
Constructor of SearcCommand
reInitializePageStack() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
Function to clear the current page stack
readObject(long) - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
redisplay() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to redisplay the current metadata, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
redisplay() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to redisplay the current metadata, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
referenceSelected(ReferenceSelectionEvent) - Method in interface edu.ucsb.nceas.morpho.datapackage.ReferencesListener
called back when ReferencesHandler class has detected a selection event in the list of available IDs and has obtained the relevant referenced data, either from the current datapackage, or from a remote package.
refresh() - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
This method is called to refresh the main query when a change is made that should be propogated to the query result screens.
refresh() - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
This method is called to refresh a query when a change is made that should be propogated to the query result screens.
refreshUI() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
calls validate() and repaint() on the middle panel
refreshUI() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
calls validate() and repaint() on the middle panel
refreshWindows() - Method in class edu.ucsb.nceas.morpho.framework.UIController
refresh all visible the windows that are in the windowList.
registerOpenButton(JButton) - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to register a open button
registerResultPanel(JPanel) - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to register a resultPanel
removeActionListener(ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Remove this java.awt.event.ActionListener from the list of registered listeners
removeActionListener(ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Remove this java.awt.event.ActionListener from the list of registered listeners
removeAllElements() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
removeAllRows() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
removes all the rows from the list
removeAllTransformerProperties() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
removes all name/value pairs from the Properties object containing the properties to be set for the transformer
removeAllWindows() - Method in class edu.ucsb.nceas.morpho.framework.UIController
Method to remove all windows in window list
removeAttributeForImport() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
removeCellEditorListener(CellEditorListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
removeChildren(String, int) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
removes all children of the specified parent
removeCleanWindows() - Method in class edu.ucsb.nceas.morpho.framework.UIController
 
removeDataChanges() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
checks the dvArray for dataViewer and reload unsaved information
removeEditingCompleteListener(EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Remove this EditingCompleteListener from the list of registered listeners
removeEditingCompleteListener(EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Remove this EditingCompleteListener from the list of registered listeners
removeElementAt(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
removeExtraInfoFlag - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
 
removeFromCache(String) - Static method in class edu.ucsb.nceas.morpho.query.LocalQuery
 
removeGeographicNodes() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
remove all the geographicNodes
removeGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Remove a GUIAction from the menu and toolbar for this frame.
removeGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.UIController
Remove a menu item and its toolbar button for a particular instance of GUIAction.
removeLast() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
Deletes the PathElement that is currently at the end of the path
removeMap() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
removeNode(String, int) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
deletes indicated node
removePVObject() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
removeReferencesListener(ReferencesListener) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
unregister a listener
removeRow(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
removes the row with the specified index from the list
removeStateChangeListener(String, StateChangeListener) - Method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
This method is called by objects to remove a listener for changes in the application state.
removeTaxonomicNodes() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
remove all the taxonomicNodes
removeTemporalNodes() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
remove all the temporalNodes
removeTransformerProperty(String) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
removes a name/value pair from the Properties object containing the properties to be set for the transformer
removeTreeModelListener(TreeModelListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
removeTriple(Triple) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
removes the specified triple from the collection and returns it.
removeWindow(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.framework.UIController
This method is called to de-register a Window that the plugin has created.
replaceRow(int, List) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
replaces the row corresponding to the given row number with the Objects in the List provided,or with a blank row if the List is null.
replaceSelectedRow(List) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
replaces the currently-selected row with the Objects in the List provided, or with a blank row if the List is null
replaceSubtree(String, Node, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
replaces subtree at location identified by genericName and index; returns root Node of replaced subtree, or null if not found, so caller can determine whether replace was successful
replaceSubtreeAtReference(String, Node) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
replaces subtree identified by the passed unique String refID; returns null if not found.
replaceSubtreeAtReference(String, Node) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
replaces subtree identified by the passed unique String refID; returns null if not found.
replaceSubtreeAtReference(String, Node) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
replaces subtree identified by the passed unique String refID; returns null if not found.
resetBounds() - Method in class edu.ucsb.nceas.morpho.framework.ModalDialog
resets location and dimensions to original values
resetColumnHeader(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.TextImportWizardEml2
 
resetModel(ColumnSortableTableModel) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Reset the table model in Jtable
resetResultsVector(Vector) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
A method to reset a vector as result, repaint table
resetRollovers() - Method in class edu.ucsb.nceas.morpho.util.HyperlinkButton
 
resolve(String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.MyURIResolver
 
resultsVector - Variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store each row of the result set as a row in a Vector
returnErrors() - Method in class edu.ucsb.nceas.morpho.util.DBValidate
provide a list of errors from the validation process
role - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
 
root - Static variable in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
root node of the in-memory DOM structure
root - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
rootNode - Variable in class edu.ucsb.nceas.morpho.editor.DTDTree
 
rootNode - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
 
run() - Method in class edu.ucsb.nceas.morpho.framework.ProgressIndicator
 
run() - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
 
run() - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Execute the thread.
runTest(Reader) - Method in class edu.ucsb.nceas.morpho.util.SAXValidate
Run the validation test using the DEFAULT_PARSER defined in this class.
runTest(Reader, String) - Method in class edu.ucsb.nceas.morpho.util.SAXValidate
 
runTest(Reader, String, String) - Method in class edu.ucsb.nceas.morpho.util.SAXValidate
Run the validation test.

S

SAVE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SAVE_QUERY_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SAXValidate - class edu.ucsb.nceas.morpho.util.SAXValidate.
Validate an XML document using a SAX parser
SAXValidate(boolean) - Constructor for class edu.ucsb.nceas.morpho.util.SAXValidate
Construct an instance of the handler class
SEARCHRESULTFRAME - Static variable in class edu.ucsb.nceas.morpho.framework.MorphoFrame
 
SEARCH_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
Denotes an instance of the SearchCommand object
SEARCH_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SEARCH_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SEARCH_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SEARCH_RESULT_NONSELECTED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that no entry in a search result frame has been selected,
SEARCH_RESULT_SELECTED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected,
SEARCH_RESULT_SELECTED_NO_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that no previous versions of the selected package are available
SEARCH_RESULT_SELECTED_SYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that the local and network versions of the selected package *are* in sync
SEARCH_RESULT_SELECTED_UNSYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that the local and network versions of the selected package are *not* in sync
SEARCH_RESULT_SELECTED_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that previous versions of the selected package *are* available
SELECTED_ATTRIBS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
SELECTED_ATTRIBS_XSLPROP used to identify selected attribute(s) when clicking on col headers (NOTE - identified by column index (0..n) - not by attribute ID:
SELECTED_DISPLAY_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
SELECTED_DISPLAY_XSLPROP used to identify the display type
SELECTED_ENTITY_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
SELECTED_ATTRIBS_XSLPROP used to identify selected entity when clicking on col headers
SELECT_DATATABLE_COLUMN - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a data table column has been selected
SEPARATOR_FOLLOWING - Static variable in class edu.ucsb.nceas.morpho.Morpho
Constant to indicate a separator should follow an action
SEPARATOR_FOLLOWING - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
SEPARATOR_PRECEDING - Static variable in class edu.ucsb.nceas.morpho.Morpho
Constant to indicate a separator should precede an action
SEPARATOR_PRECEDING - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
SUBPANEL_TITLE_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SUBTITLE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
SUBTITLE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
SUBTITLE_FONT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
SUBTITLE_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
SUMMARY - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
SUMMARY_TEXT_INLINE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
SUMMARY_TEXT_NODATA - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
SUMMARY_TEXT_OFFLINE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
SUMMARY_TEXT_ONLINE - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
SUPPRESS_TRIPLES_DELIMETER - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to delimit the list of all module ID(s) to be suppressed in DataPackage metaview.
SUPPRESS_TRIPLES_OBJECTS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold a list of all module ID(s) to be suppressed as triples OBJECTS in DataPackage metaview.
SUPPRESS_TRIPLES_SUBJECTS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold a list of all module ID(s) to be suppressed as triples SUBJECTS in DataPackage metaview.
SURNAME - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
SURNAMEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of surname in resultsVector
SaveDialog - class edu.ucsb.nceas.morpho.datapackage.SaveDialog.
A dialog box for user choice of export options
SaveDialog(AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.SaveDialog
Construct a new instance of the dialog where parent is morphoframe
SaveDialog(AbstractDataPackage, boolean) - Constructor for class edu.ucsb.nceas.morpho.datapackage.SaveDialog
 
SavePackageCommand - class edu.ucsb.nceas.morpho.datapackage.SavePackageCommand.
Class to Save an AbstractDataPackage to Metacat and/or Local File system
SavePackageCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.SavePackageCommand
Constructor of SavePackageCommand
SavePackageCommand(AbstractDataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.SavePackageCommand
Constructor of SavePackageCommand
SavePackageCommand(AbstractDataPackage, boolean) - Constructor for class edu.ucsb.nceas.morpho.datapackage.SavePackageCommand
constructor with boolean to determine if saved package is displayed
SaveQueryCommand - class edu.ucsb.nceas.morpho.query.SaveQueryCommand.
Class to handle savequery command
SaveQueryCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.SaveQueryCommand
Constructor of SearcCommand
SearchCommand - class edu.ucsb.nceas.morpho.query.SearchCommand.
Class to handle search command
SearchCommand(OpenDialogBox, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.SearchCommand
Constructor of SearcCommand
ServiceController - class edu.ucsb.nceas.morpho.plugins.ServiceController.
The ServiceController handles the registration of services and service lookup for other objects.
ServiceExistsException - exception edu.ucsb.nceas.morpho.plugins.ServiceExistsException.
This exception is thrown when a plug registers a service under a serviceName that has previously been registered.
ServiceExistsException(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.ServiceExistsException
 
ServiceNotHandledException - exception edu.ucsb.nceas.morpho.plugins.ServiceNotHandledException.
This exception is thrown when a service request is made of an object and that object can not properly handle the request, either because it is not designed to handle it, or there was an error in trying to handle it.
ServiceNotHandledException(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.ServiceNotHandledException
 
ServiceProvider - interface edu.ucsb.nceas.morpho.plugins.ServiceProvider.
All component plugins that provide services must implement this interface so that the framework can identify them.
SortDataTableCommand - class edu.ucsb.nceas.morpho.datapackage.SortDataTableCommand.
Class to handle sort data table command
SortDataTableCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.SortDataTableCommand
Constructor of sort data table command
SortTableCommand - class edu.ucsb.nceas.morpho.util.SortTableCommand.
Class to handle sorting table command
SortTableCommand(JTable, int, String) - Constructor for class edu.ucsb.nceas.morpho.util.SortTableCommand
Constructor of SortableCommand
SortableJTable - class edu.ucsb.nceas.morpho.util.SortableJTable.
A classs represent sortable table
SortableJTable() - Constructor for class edu.ucsb.nceas.morpho.util.SortableJTable
Default constructor
SortableJTable(ColumnSortableTableModel) - Constructor for class edu.ucsb.nceas.morpho.util.SortableJTable
Constructor of SortableJTable
SortableTableHeaderCellRenderer - class edu.ucsb.nceas.morpho.util.SortableTableHeaderCellRenderer.
The class for Renderer of sortable table header cell
SortableTableHeaderCellRenderer() - Constructor for class edu.ucsb.nceas.morpho.util.SortableTableHeaderCellRenderer
Consturctor of SortableHeaderCellRender
SplashFrame - class edu.ucsb.nceas.morpho.framework.SplashFrame.
GUI window that provides information about Morpho, its contributors, and acknowlegements.
SplashFrame(String, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct a frame and optionally display a note that the application is loading.
SplashFrame() - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct the window with defaults
SplashFrame(String) - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct a frame with a title
SplashFrame(boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct a frame and display a note that the application is loading.
StateChangeEvent - class edu.ucsb.nceas.morpho.util.StateChangeEvent.
An event that represents a state change in the application, showing both the state that changed and the source of the state change.
StateChangeEvent(Component, String) - Constructor for class edu.ucsb.nceas.morpho.util.StateChangeEvent
Construct a new StateChange event.
StateChangeListener - interface edu.ucsb.nceas.morpho.util.StateChangeListener.
Any object that is interested in the status of the morpho framework state changed events should implement this interface and register with the StateChangeMonitor to be notified of changes.
StateChangeMonitor - class edu.ucsb.nceas.morpho.util.StateChangeMonitor.
Maintain a registry of objects that are interested in changes in application state.
StatusBar - class edu.ucsb.nceas.morpho.framework.StatusBar.
A graphical status bar for displaying information about network and login status.
StatusBar() - Constructor for class edu.ucsb.nceas.morpho.framework.StatusBar
Constructor - creates the StatusBar and initializes its state
StorageType_xPath - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributeSettings
 
StoreStateChangeEvent - interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent.
In order to handle local event, we need to compare the parent of event's source and GUIAction'parent.
SubjectTermPanel - class edu.ucsb.nceas.morpho.query.SubjectTermPanel.
This panel contains all the elements for a single text query term.
SubjectTermPanel() - Constructor for class edu.ucsb.nceas.morpho.query.SubjectTermPanel
Constructor
SubjectTermPanel(KeyAdapter) - Constructor for class edu.ucsb.nceas.morpho.query.SubjectTermPanel
 
Summary - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary.
 
Summary(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
SwingWorker - class edu.ucsb.nceas.morpho.framework.SwingWorker.
This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread.
SwingWorker() - Constructor for class edu.ucsb.nceas.morpho.framework.SwingWorker
Start a thread that will call the construct method and then exit.
SynchronizeDialog - class edu.ucsb.nceas.morpho.query.SynchronizeDialog.
A dialog box for user to synchronize data package
SynchronizeDialog(MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.SynchronizeDialog
Construct a new instance of the synchronize dialog which's parent is morpho frame
SynchronizeDialog(OpenDialogBox, MorphoFrame, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.SynchronizeDialog
Construct a new instance of the synchronize dialog which's parent is a open dialog
SynchronizeVector - class edu.ucsb.nceas.morpho.query.SynchronizeVector.
Title:
SynchronizeVector() - Constructor for class edu.ucsb.nceas.morpho.query.SynchronizeVector
Constructor
save(String, Document, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Save the DOM doc as a file
save() - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Save the configuration file
save() - Method in class edu.ucsb.nceas.morpho.query.Query
Save an XML serialized version of the query in the profile directory
saveAsFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
saveCurrentTable(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to save the current data table after a change has been made.
saveDOM(String, Document, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
saveDOM(Node) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
saveDataChanges() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
checks the dvArray for dataViewer that may have changed data and then saves the changed data
saveDataFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveDataFile(String, InputStream) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveDataFile(String, Reader, String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
A variant of saveFile designed for use with Data Files.
saveDataFile(String, InputStream, String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
A variant of saveFile designed for use with Data Files.
saveFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
saveFile(String, Reader) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
save a file to the datastore with the id of name.
saveFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveFile(String, Reader, String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
Saves a file with the given name.
saveFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Save an xml metadata file (which already exists) to metacat using the "update" action.
saveFile(String, Reader, boolean) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
 
saveFilesTransaction(Vector, Vector) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
 
saveTempDataFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveTempDataFile(String, InputStream) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveTempFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
scaleToFit(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent
 
scaleToFitX() - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent
 
scrollToRow(int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Scrolls the CustomList (if necessary) to the particular row such that it becomes visible.
selectAndEditCell(int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
sendDataFile(String, File) - Method in class edu.ucsb.nceas.morpho.Morpho
sends a data file to the metacat using "multipart/form-data" encoding
sendGetMessage() - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Performs a GET request to the previously given servlet with no query string
sendGetMessage(Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Performs a GET request to the previously given servlet Builds a query string from the supplied Properties list.
sendPostData(Properties, Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Sends post data using multipart/form-data encoding.
sendPostData(Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Sends post data using url encoding.
sendPostMessage() - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Performs a POST request with no query parameters
sendPostMessage(Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Deprecated. Replaced by #sendPostData(Properties args)
separator - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
serialize(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This abstract method turns the datapackage into a form (e.g.
serialize(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
 
serialize(String) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
 
serializeData() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
set(String, int, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
used to set a value corresponding to 'key'; value is changed in DOM structure in memory
setAbstractDataPackage(AbstractDataPackage) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setAbstractState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of Abstract check box
setAcceleratorKey(KeyStroke) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Method to set accelerator key
setAcceleratorKeyString(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
set a accelerator key for this action
setAccessionNumber(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method to set accession number from DOM
setAllState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of 'All' check box
setAttribute(String, String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Add a new attribute to this node, or set its value
setAttributeFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setBackButtonEnabled(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
set enabled/disabled state of Back Button (primarily to allow disabling when there is no previous page in History to go back to)
setBackground(Color) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the boolean to indicate whether the customlist can be edited or not.
setBorderForButtonPanel(int, int, int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the border widths for the button Panel.
setBoundingBox(double, double, double, double) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
setBoundingBoxToSaved() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
setBounds(int, int, int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellRenderer
 
setBusy(boolean) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the ProgressIndicator to either the busy or notBusy state.
setBusy(boolean) - Method in class edu.ucsb.nceas.morpho.framework.ProgressIndicator
 
setBusyFlag(boolean) - Method in class edu.ucsb.nceas.morpho.framework.ProgressIndicator
 
setButtonsStatus(boolean, boolean, boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
Method to set the enabled/disabled state of the three buttons in the WizardContainerFrame.
setCardinality(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setCaseSensitive(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set if the QueryTerm is case sensitive
setChangeFlag(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setCheckboxFlag(boolean) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setChoice(boolean) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setClipboardObject(Object) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
setColumnHeaderStrings(int, Vector) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
setColumnLabels(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to set the column_lables
setColumnWidthPercentages(double[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the relative widths of each column in the columnList.
setCommand(Command) - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
sets the edu.ucsb.nceas.morpho.util.Command for this item.
setCommand(Command) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the command in this action object
setCommandOnStateChange(String, Command, int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the state of this action to the enabled value if a state change matching changedState occurs.
setComponent(JComponent) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent
 
setConnectStatus(boolean) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the "connection status" icon
setContainer(AbstractDataPackage) - Method in class edu.ucsb.nceas.morpho.datapackage.Attribute
 
setContainer(AbstractDataPackage) - Method in class edu.ucsb.nceas.morpho.datapackage.Entity
 
setContainer(DocFrame) - Method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
setController(EditorPlugin) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the Controller attribute of the DocFrame object The 'controller' is the class used to call the DocFrame editor.
setCookie(String) - Static method in class edu.ucsb.nceas.morpho.framework.HttpMessage
return the cookie that this message object contains
setCurrentActiveWindow(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.framework.UIController
set currently active window
setCurrentDataPackageID(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
 
setCurrentPage(String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
sets the wizard content for the center pane
setCurrentPage(AbstractUIPage) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
sets the wizard content for the center pane
setCurrentURLInfo(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setCustomAddAction(Action) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the javax.swing.Action to be executed on pressing the ADD button.
setCustomCancelAction(Action) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Sets the javax.swing.Action to be executed on pressing the cancel button.
setCustomDeleteAction(Action) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the javax.swing.Action to be executed on pressing the appropriate list button.
setCustomDuplicateAction(Action) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the javax.swing.Action to be executed on pressing the appropriate list button.
setCustomEditAction(Action) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the javax.swing.Action to be executed on pressing the appropriate list button.
setDOMToReturn(Node) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
 
setDataChangedFlag(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setDataDefault(String) - Static method in class edu.ucsb.nceas.morpho.datapackage.MyURIResolver
 
setDataFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setDataFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setDataID(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setDataLocation(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
sets data location to be used in summary text that will be shown on the page of the wizard.
setDataPackageWizardListener(DataPackageWizardListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
sets the DataPackageWizardListener to be called back when the Wizard has finished
setDebug(boolean) - Static method in class edu.ucsb.nceas.morpho.util.Log
Turn debugging on or off
setDebugLevel(int) - Static method in class edu.ucsb.nceas.morpho.util.Log
Set the threshold severity for debugging output
setDefaultIcon(Icon) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the default icon.
setDisplayName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
Method to set displayName for the ExternalRefsDialog
setDisplayName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
Method to set displayName for the ExternalRefsDialog
setDisplayName(String) - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
sets the text display name for this item.
setDistributionUrl(int, int, int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method sets the url for data as a String for the indexed entity, physical object, and distribution object.
setDocID(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the doc id of this node
setDoctype(String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the Doctype attribute of the DocFrame object
setDocument(Document) - Method in class edu.ucsb.nceas.morpho.editor.DOMTree
Sets the document.
setDocumentLocator(Locator) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
setEditable(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the boolean to indicate whether the customlist can be edited or not.
setEditable(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
The action sets all the fields in 'this' page editable or non-editable based on boolean arguement passed
setEditor(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setElementAt(Serializable, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setEnableMouseListener(boolean) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Enable or disable mouse listner
setEnabled(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the boolean to indicate whether the customlist should be disabled or not.
setEnabledOnStateChange(String, boolean, int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the state of this action to the enabled value if a state change matching changedState occurs.
setEntityFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setEntityFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setEntityID(int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method sets the entity ID, given the index of the entity in the entityNode array and the ID.
setEntityIndex(int) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setEntityItems(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setEntityNumRecords(int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method sets the number of records in the entity, given the index of the entity in the entityNode array
setExtraColumnHeaderInfo(int, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
setFactory(XMLFactoryInterface) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Set the current XML factory, used to resolve IDs into XML documents
setFieldDelimiter(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setFieldDelimiter(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setFile(File) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the File attribute of the DocFrame object
setFilterDocList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of filter docs of this query
setFirstRow(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setFramework(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setGenericValue(String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
setHTML(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
set the HTML content
setHTML(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
set content in the embedded HTMLPanel object
setHeader(String[]) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
This method will change the clonum name of model
setHeaderLinesVector(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to set a vector as a header lines vector
setHelp(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setIcon(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setIdentifier(String) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the identifier of this query
setIgnoreConsecutiveDelimiters(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setInMemoryNum(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setIndentAmount(String) - Static method in class edu.ucsb.nceas.morpho.datapackage.EMLConvert
 
setIndexOfSortedColumn(int) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Set the index of sorted column
setInitialId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
sets the initialId variable
setItem(Object) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setKeywordsState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of Keywords check box
setLastImportedAttributes(List) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
setLastImportedDataSet(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
setLastImportedEntity(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
setListButtonDimensions(Dimension) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
Sets the dimensions for all the buttons in the custom list.
setListValueHash(Hashtable) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setLocation(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
Method to set the location
setLocation(short) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
Set location of original metadata to be referenced
setLogFlag(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setLogStack(Stack) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setLoginStatus(boolean) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the "login status" icon
setLoginSuccessful(boolean) - Method in class edu.ucsb.nceas.morpho.framework.ConnectionFrame
notifies client whether login was successful or not
setLoginSuccessful(boolean) - Method in interface edu.ucsb.nceas.morpho.framework.LoginClientInterface
notifies client whether login was successful or not
setLookAndFeel(String) - Static method in class edu.ucsb.nceas.morpho.Morpho
set look & feel to system default
setMainContentPane(Component) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the content pane of the main Morpho window to display the component indicated.
setMapping(Hashtable) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
This method will set a mapping table
setMaximumValue(int) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Method to set the maximum value of the progress bar
setMenu(String, int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Sets the menu and its position for this action
setMenuBar(JMenuBar) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the menu bar when it needs to be changed.
setMenuItemPosition(int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the menu item position for this action
setMessage(String) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the StatusBar to display a message
setMessage(String) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the text message to display
setMetacatURLString(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set metacat URL string
setMetadataNode(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
setMetadataPath(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
setModel(ColumnSortableTableModel) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Overwrite the setModel in Jtable
setName(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setNodeID(long) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the id of this node
setNodeIndex(int) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the node index of this node
setNodeType(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the type of this node
setNodeVisLevel(int) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setObject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
Set the object of this triple
setObjectList(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to assign a vector to objectList
setOperator(String) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Set the operator for this QueryGroup
setOrderOfSortedColumn(String) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Set the order of sorted column
setOriginalEntityArray(Entity[]) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
 
setOwnerList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of owners used to constrain this query
setPCValue(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setPV(PersistentVector) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
sets the fields in the UI page using the Map object that contains all the key/value paired
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.framework.AbstractUIPage
sets the fields in the UI page using the Map object that contains all the key/value paired
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AttributePage
sets the Data in the Attribute Dialog fields.
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CitationPage
sets the Data in the Attribute Dialog fields.
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportSummary
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CustomUnitPage
sets the fields in the UI page using the Map object that contains all the key/value paired
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataFormat
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Entity
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.General
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Geographic
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Keywords
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.KeywordsPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Methods
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.MethodsPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
sets the OrderMap for this wizard page
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
sets the OrderMap for this wizard page
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Summary
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
sets the fields in the waird page using the Map object that contains all the key/value paired
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
 
setPageData(OrderedMap, String) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
 
setPageFormat(PageFormat) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
 
setPageFormat(PageFormat) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame
 
setPageFormat(PageFormat) - Static method in class edu.ucsb.nceas.morpho.plugins.printer.PrinterPlugin
 
setPanelData(String, OrderedMap) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageSubPanelAPI
sets the data in the sub panel using the key/values paired Map object
setPanelData(OrderedMap) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
sets the fields in the wizard panel using the Map object that contains all the key/value paired
setPanelData(String, OrderedMap) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
sets the fields in the wizard panel using the Map object that contains all the key/value paired and the relative xPath to be used
setPanelData(String, OrderedMap) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.IntervalRatioPanel
sets the Data in the IntervalRatio Panel.
setPanelData(String, OrderedMap) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
sets the data in the sub panel using the key/values paired Map object
setParentDialog(JDialog) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Method to set the parent dialog.
setParentID(long) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the parent id of this node
setPassword(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the password associated with this framework
setPathExpression(String) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set the path expression parameter
setPersistentVector(PersistentVector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setPhysicalFieldDelimiter(int, int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method sets the FieldDelimiter for the indexed entity and physical object.
setPhysicalFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setPhysicalSize(int, int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method sets the size for the indexed entity and physical object.
setPrefMaxSizes(JComponent, Dimension) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
setPreviousElement(PathElementInterface) - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
sets the previous PathElementInterface in the path
setPrintable(Printable) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
 
setProfile(ConfigXML) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile for the currently logged in user (on startup, or when switching profiles).
setProfile(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile associated with this framework based on its name
setProfileDontLogin(ConfigXML) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile for the currently logged in user, but does not popup a login dialog
setProfileDontLogin(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile associated with this framework based on its name, but does not popup a login dialog
setProgressBar(JProgressBar) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Method to set the progress bar.
setProgressBarString(String) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Method to set the String shown on the progress bar.
setProgressUpdateTime(int) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Method to set the time after which progress bar is updated
setProgressUpdateValue(int) - Method in class edu.ucsb.nceas.morpho.util.ProgressBarThread
Method to set the int value with which progress bar is updated.
setQuery(Query) - Method in class edu.ucsb.nceas.morpho.query.QueryDialog
Set the query that should be displayed and edited in the dialog
setQuery(Query) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Set the query that was used to construct these results (for use by LocalQuery)
setQuery(Query) - Method in class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
Set query to this object
setQueryGroup(QueryGroup) - Method in class edu.ucsb.nceas.morpho.query.Query
set the QueryGroup used to express query constraints
setQueryMetacatCancelled(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
setQueryTitle(String) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the title of this query
setReferenceID(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
Set referenced id string
setReferenceSelectionEvent(ReferenceSelectionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.ExternalRefsPage
 
setRelationship(String) - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
Set the relationship of this triple
setResultPanel(ResultPanel) - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBox
Method to set a resultpanel to the dialog
setResultSet(ResultSet) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Set the result set for ResultPanel and repaint table
setResultsVector(Vector) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Set results vector
setResultsVector(Vector) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
set the resultsVector
setReturnDocList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of return docs of this query
setReturnFieldList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of fields to be returned by this query
setRolloverSmallIcon(Icon) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the *rollover* small Icon to be displayed on toolbar buttons
setRolloverTextLabel(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the *rollover* text label to be displayed on toolbar buttons (mainly used for HTML text, where only the color or font face changes)
setRootEditor(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setRootElementName(String) - Method in class edu.ucsb.nceas.morpho.editor.DTDTree
 
setRootNodeID(long) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the root node id of this node
setSSLStatus(boolean) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the "ssl status" icon
setScale(double, double) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PrintableComponent
 
setSearchLocal(boolean) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set searchLocal
setSearchMetacat(boolean) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set searchMetacat
setSearchMode(String) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set the searchmode parameter
setSearchMode(String) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set the search mode field
setSearchMode(String) - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
set the search mode field
setSelected(boolean) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setSelectedColumns(int[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomTable
 
setSelectedRows(int[]) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.CustomList
 
setSeparatorPosition(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the separator for this action
setShowPageCountdown(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
if true is passed, the "page # of ##" counter will be shown in the footer
setSiteList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of sites used to constrain this query
setSize(float, float) - Method in class edu.ucsb.nceas.morpho.plugins.printer.PrintFrame.PageableComponent
 
setSmallIcon(Icon) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the small Icon to be displayed on toolbar buttons & menus.
setSortDirection(int) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to set sort direction
setSorted(boolean) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Set the table sorted or not
setSource(JTable) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
setSource(JTable) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
setSubMenu(boolean) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the action pull right submenu
setSubMenuPath(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the action path for sub menu or sub menuitem.
setSubject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
Set the subject of this triple
setSubtreeRootNodeName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
Set referenced id string
setSummaryText(String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
sets summary text that will be shown on the final page of the wizard.
setTable(String, List, Vector) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
setTagName(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the name of this node
setTarget(JTable) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
setTaxonRank(String) - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
set the taxon rank field
setText(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
overrides the setTextMethod to insure that text is selected
setTextLabel(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the text for the display label
setTitle(String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Set the title in the titlebar
setTitle(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Set the title in the titlebar
setTitleBarColor(Color) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
set color of title bar (ie main part of header above path bar) this may need to be called for example to change titlebar color for focus/non-focus indocation
setTitleBarText(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
set text of title bar (ie main part of header above path bar)
setTitleState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of Title check box
setTmpDir(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method set tmp directory for Object file
setTool(String) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
Replace a tool in the toolArray.
setTool(int, String) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
Replace a tool in the toolArray.
setToolTipText(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the text to be displayed as a mouse-over tooltip
setToolbarPosition(int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the position of this action on the toolbar.
setTopOfTree(Node, String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
This method will reset the treeModel rootnode, thus changing the node displayed at the top of the tree NOTE: this only works if the treemodel was created from a DOM since it uses XPath to search the DOM and then looks up the equivalent JTree node
setTopOfTree(DefaultMutableTreeNode, String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
This method will reset the treeModel rootnode, thus changing the node displayed at the top of the tree 'name' is name of new node to be at top of tree
setTopPanel(JPanel) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setTransformerProperties(Properties) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
The Properties object passed to this method will be used to set all the name/value pairs describing the properties to be set for the transformer.
setTree(JTree) - Method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
setTreeModel(DefaultTreeModel) - Method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
setTreeValueFlag(boolean) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the TreeValueFlag attribute of the DocFrame object
setUserName(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the username associated with this framework
setValue(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Method to set a stirng value
setValue(String) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set the value parameter
setValue(String) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set the text that is to be seached for.
setValue(String) - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
set the text that is to be seached for.
setValueAt(Object, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setValueAt(JTable, int, int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
setValueAt(Object, Object, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
setValueAt(Object, Object, int) - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel
Sets the value for node node, at column number column.
setValueAt(Object, int, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the Visible attribute of the DocFrame object
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.framework.HTMLBrowser
 
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.framework.MorphoPrefsDialog
 
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.framework.SplashFrame
Show or hide the window.
setWizardIsRunning(AbstractDataPackage) - Method in class edu.ucsb.nceas.morpho.framework.UIController
called by DataPackageWizardPlugin whenever wizard starts running, and is passed a temporary AbstractDataPackage that is used to store wizard data (for references use) - this ADP will be returned by any calls to getCurrentAbstractDataPackage() while the wizard is running.
setWizardNotRunning() - Method in class edu.ucsb.nceas.morpho.framework.UIController
called by DataPackageWizardPlugin whenever wizard starts running, and is passed a temporary AbstractDataPackage that is used to store wizard data (for references use) - this ADP will be returned by any calls to getCurrentAbstractDataPackage() while the wizard is running.
setXMLAttribute(boolean) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setXPathValsMap(OrderedMap) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
Set OrderedMap of xpath/value pairs
set_strings() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
shouldSelectCell(EventObject) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
showEditAccessDialog() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
showNewAccessDialog() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
showNewPackage(AbstractDataPackage) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
method to display the new package after changes have been made
showNewPackageNoLocChange(AbstractDataPackage) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
method to display the new package after changes have been made with no change in location
showPackageSummary() - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
This method displays a summary of Package information by calling the various utility methods defined in this class.
size() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
skippedEntity(String) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
sort(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
sorts the table; set sortdir=1 for ascending set sortdir = -1 for descending
sort(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
sorts records in the config.xml file based on the passed stylesheet
sortAttributes(NamedNodeMap) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Returns a sorted list of attributes.
sortAttributes(NamedNodeMap) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Returns a sorted list of attributes.
sortAttributes(NamedNodeMap) - Static method in class edu.ucsb.nceas.morpho.util.XMLUtil
Returns a sorted list of attributes.
sortTable(int, String) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Method to sort the table in result panel
sortTableByColumn(int, String) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Method implements from SortTableModel.
sortTableByColumn(int, String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Method implements from SortTableModel.
sortTableByColumn(int, String) - Method in interface edu.ucsb.nceas.morpho.util.ColumnSortableTableModel
 
sortVector(Vector, int, String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
 
source - Variable in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
source - Variable in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
start() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Start the worker thread.
startCodeDefImportWizard(DataPackageWizardListener) - Method in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
method to start the Code Definitions Import wizard
startCodeDefImportWizard(DataPackageWizardListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
method to start the Code Definitions Import wizard
startDocument() - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
SAX handler callback that is called when an XML document is initially parsed.
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.query.Query
callback method used by the SAX Parser when the start tag of an element is detected.
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
SAX handler callback that is called upon the start of an element when parsing an XML document.
startEntityWizard(DataPackageWizardListener) - Method in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
method to start the Entity wizard
startEntityWizard(DataPackageWizardListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Required by DataPackageWizardInterface: method to start the Entity wizard
startFlap() - Method in interface edu.ucsb.nceas.morpho.framework.ButterflyFlapCoordinator
Method to start butterfly flapping in a morpho frame
startFlap() - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Method implements from ButterflyFlapCoordinator
startImport() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.TextImportWizardEml2
Start the import.
startPackageWizard(DataPackageWizardListener) - Method in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
method to start the Package wizard
startPackageWizard(DataPackageWizardListener) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Required by DataPackageWizardInterface: method to start the Package wizard
startPrefixMapping(String, String) - Method in class edu.ucsb.nceas.morpho.query.ResultsetHandler
Unused SAX handler
stateChanged(ChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
stdTaxonRanks - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
stopCellEditing() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractCellEditor
 
stopFlap() - Method in interface edu.ucsb.nceas.morpho.framework.ButterflyFlapCoordinator
Method to stop butterfly flapping in a morpho frame
stopFlap() - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Method implements from ButterflyFlapCoordinator
storingStateChangeEvent(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method implements form StoreStateChangeEvent This method will be called to store a event
storingStateChangeEvent(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method implements form StoreStateChangeEvent This method will be called to store a event
storingStateChangeEvent(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Method implements form StoreStateChangeEvent This method will be called to store a event
storingStateChangeEvent(StateChangeEvent) - Method in interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent
This method is called if a StateChangeEvent need to be stored
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
subtitle - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
subtreeExists(String, int) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
convenience method to check if requested subtree exists (as identified by genericName String and int index).

T

TASKBAR_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
a guess at how high most taskbars will be (in pixels)
TAXONOMIC - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
TEMPORAL - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
TEMPORAL_PAGE - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
TEMP_REFS_EML200_DOCUMENT_TEXT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
TEXT_IMPORT_WIZARD - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
TITLE - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
 
TITLEBAR_BOTTOM_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_COMPONENT_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_SIDES_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_TOP_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of titl in resultsVector
TITLE_CITATION_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_CITATION_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_CITATION_FONT_BOLD - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_CITATION_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_FONT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
TITLE_LOCATION_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
TITLE_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Color for text on title bars of sub-windows in datapackage view (i.e.
TOEML2 - Static variable in class edu.ucsb.nceas.morpho.query.ExportCommand
 
TOP_PANEL_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
TOP_PANEL_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
TRIPLEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of triple in resultsVector
TableCopyCommand - class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand.
Class to handle table paste command
TableCopyCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
Constructor of paste command
TableCutCommand - class edu.ucsb.nceas.morpho.datapackage.TableCutCommand.
Class to handle table paste command
TableCutCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
Constructor of paste command
TableDataToNodes() - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
TablePasteCommand - class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand.
Class to handle table paste command
TablePasteCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
Constructor of paste command
TaxonImportPanel - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel.
class for the panel that is displayed when a user wants to import taxonomic data from his data tables.
TaxonTermPanel - class edu.ucsb.nceas.morpho.query.TaxonTermPanel.
This panel contains all the elements for a single taxon query term.
TaxonTermPanel() - Constructor for class edu.ucsb.nceas.morpho.query.TaxonTermPanel
Constructor
TaxonTermPanel(KeyAdapter) - Constructor for class edu.ucsb.nceas.morpho.query.TaxonTermPanel
 
Taxonomic - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic.
 
Taxonomic() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
Temporal - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal.
This is the page that shows the list of previously-added temporal coverages, from where the user can use the add or edit buttons to bring up the dialog
Temporal() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Temporal
 
TemporalPage - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage.
This is the actual temporal dialog page, where the user enters temporal range limits
TemporalPage() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TemporalPage
 
TextAreaPanel - class edu.ucsb.nceas.morpho.editor.TextAreaPanel.
TextAreaPanel is an example of a special panel editor for use with the DocFrame class.
TextAreaPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.TextAreaPanel
 
TextImportListener - interface edu.ucsb.nceas.morpho.plugins.TextImportListener.
This listener is called when the TextImportWizard either finishes or is canceled
TextImportWizardEml2 - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.TextImportWizardEml2.
'Text Import Wizard' is modeled after the text import wizard in Excel.
TextImportWizardEml2(File, TextImportListener, WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.TextImportWizardEml2
constructor
ToolTippedSortableJTable - class edu.ucsb.nceas.morpho.query.ToolTippedSortableJTable.
A classs represent sortable table
ToolTippedSortableJTable(ColumnSortableTableModel) - Constructor for class edu.ucsb.nceas.morpho.query.ToolTippedSortableJTable
Constructor of ToolTippedSortableJTable
ToolTippedTextRenderer - class edu.ucsb.nceas.morpho.query.ToolTippedTextRenderer.
Renders the contents of a table cell with tool tip
ToolTippedTextRenderer(int) - Constructor for class edu.ucsb.nceas.morpho.query.ToolTippedTextRenderer
Create the renderer with appropriate formatting options set
TreeTableModel - interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModel.
TreeTableModel is the model used by a JTreeTable.
TreeTableModelAdapter - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter.
This is a wrapper class takes a TreeTableModel and implements the table model interface.
TreeTableModelAdapter(TreeTableModel, JTree) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TreeTableModelAdapter
 
Triple - class edu.ucsb.nceas.morpho.datapackage.Triple.
This class implements one triple which defines one relationship inside of a package.
Triple() - Constructor for class edu.ucsb.nceas.morpho.datapackage.Triple
create an initialized, blank Triple object
Triple(String, String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Triple
create a new triple with the specified subject relationship and object
Triple(Triple) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Triple
Copy constructor.
TripleCollection - class edu.ucsb.nceas.morpho.datapackage.TripleCollection.
This class implements a collection of triples which make up all of the relationships in a package.
TripleCollection() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
Default Constructor
TripleCollection(File, Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
parses an xml document and pulls any triples out of it.
TripleCollection(TripleCollection) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
Copy constructor.
TripleCollection(Reader) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
read an xml file, build the collection from any triples in the xml file.
TripleCollection(Reader, CatalogEntityResolver) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
read an xml file, build the collection from any triples in the xml file.
TripleCollection(Vector) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
create a collection of triples from a vector of Triple objects.
TripleParser - class edu.ucsb.nceas.morpho.datapackage.TripleParser.
A Class implementing callback bethods for the SAX parser.
TripleParser(Reader) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
TripleParser(Reader, CatalogEntityResolver) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
table - Variable in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
table - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
tableChanged(TableModelEvent) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
target - Variable in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
tempdir - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
textChoice - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
thisStaticInstance - Static variable in class edu.ucsb.nceas.morpho.Morpho
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Access
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefinition
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeImportPage
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.GeographicPage
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.ImportWizard
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Introduction
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyIntro
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.PartyMainPage
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Project
 
title - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
toFormatedXML() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple in xml format with easy to read formatting.
toFormatedXML() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a nicely formatted string representation of this collection in xml the xml looks like this:
toString() - Method in class edu.ucsb.nceas.morpho.datapackage.MetadataObject
 
toString() - Method in class edu.ucsb.nceas.morpho.datapackage.ReferenceMapping
 
toString() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple as a string
toString() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
return this collection as a string
toString() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
toString() - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
returns the config file as a string
toString() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
returns a String representation of all the elements in the History, without actually removing them from history
toString() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
returns a String representation of all the elements in the Path,
toString() - Method in class edu.ucsb.nceas.morpho.query.Query
create a String description of the query that this instance represents.
toString() - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
create a String description of the query that this instance represents.
toString() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
create a String description of the query that this instance represents.
toXML() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple in xml format.
toXML() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
 
toXML(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a string representation of this collection in xml format.
toXml() - Method in class edu.ucsb.nceas.morpho.query.Query
create a XML serialization of the query that this instance represents
toXml(int) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
create a XML serialization of the query that this instance represents
toXml(int) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
create a XML serialization of the query that this instance represents
topPanel - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
transform(Reader) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
transforms the passed XML document, using a "generic" stylesheet, whose name is obtained from the config.xml file
transform(Reader, Reader) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Uses the stylesheet provided, to apply XSLT to the XML document provided
transform(Document) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
transforms the passed XML document, using a "generic" stylesheet, whose name is obtained from the config.xml file
transform(Document, Reader) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Uses the stylesheet provided, to apply XSLT to the XML DOM Document provided
tree - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
 
tree - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
tree - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable
 
treeModel - Variable in class edu.ucsb.nceas.morpho.editor.DTDTree
 
treeModel - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
 
treeModel - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
treeTable - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
typeComboBox - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 

U

UIController - class edu.ucsb.nceas.morpho.framework.UIController.
The UIController handles the state of the morpho menu and toolbars so that they are synchronized across the various plugins.
UISettings - class edu.ucsb.nceas.morpho.util.UISettings.
This is a class containing static methods and attributes that define global display settings in Morpho, which can't be represented directly by string values from config.xml (such as Fonts, colors etc) N O T E : currently, this class also contains values that *could* be represented by strings in a config file - this is an interim step - one step better than hard-coding them in the UI classes, but should still be replaced by calls to a config file, ultimately.
UNDEFINED - Static variable in class edu.ucsb.nceas.morpho.datapackage.ReferenceSelectionEvent
 
UNFOCUSED_BORDER_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
UPDATEDATEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of update in resultsVector
USAGE_RIGHTS - Static variable in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardInterface
 
USER_RESPONSE - Variable in class edu.ucsb.nceas.morpho.framework.ModalDialog
 
USER_RESPONSE - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
 
UsageRights - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights.
 
UsageRights() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.UsageRights
 
unhiliteComponent(JComponent) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory
 
updateAllStatusBars() - Method in class edu.ucsb.nceas.morpho.framework.UIController
updates status bar in response to changes in connection parameters
updateDOMFromPartiesList(CustomList, String, String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Given a CustomList containing Party listings, updates the DOM to contain those listings
updateJComboBox(AbstractDataPackage, JComboBox, String) - Method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
update the ListModel backing the passed JComboBox - @see getJComboBox()
updateOriginalReferenceSubtree(AbstractDataPackage, String, OrderedMap, List) - Static method in class edu.ucsb.nceas.morpho.datapackage.ReferencesHandler
gets the subtree with refID "subtreeID" from the datapackage "adp", and replaces it with the subtree described in the newData OrderedMap
updatePartiesListFromDOM(CustomList, String, String, String) - Static method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.DataPackageWizardPlugin
Given a CustomList containing Party listings, updates that list to contain the parties in the DOM
updateSavedQueryMenuItems(Morpho) - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
This mehod will be called when Morpho switch to another profile.
updateSavedQueryMenuItems(Morpho) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
This method implements from QueryRefreshInterface.
updateWindow(MorphoFrame, String) - Method in class edu.ucsb.nceas.morpho.framework.UIController
This method is called by plugins to update window that is an instance of MorphoFrame.
upload(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.AbstractDataPackage
Copies the AbstractDataPackage with the indicated id from the local file store to Metacat
upload() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
uploads the package with the default of automatically updating the ids when a conflict occurs.
upload(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Uploads a local package to metacat
upload(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Uploads the package to metacat.
upload(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.EML200DataPackage
 
upload(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.EML2Beta6DataPackage
 
upload(String, boolean) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to upload a datapackage that is currently stored locally to metacat and return a new id or orignal id.
useEnumerationList - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
useTransformerProperty(String, String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to add a key/value transformer property pair to the properties that will be passed onto the XSL Transformation Engine, and will then be made available to the actual XSL stylesheets as values
useTransformerProperty(String, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to add a key/value transformer property pair to the properties that will be passed onto the XSL Transformation Engine, and will then be made available to the actual XSL stylesheets as values
userAccess - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessPage
 
usernameChanged(String) - Method in interface edu.ucsb.nceas.morpho.framework.ConnectionListener
This method is called if there is a change in the username.
usernameChanged(String) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
Implement the ConnectionListener interface so we know when to refresh queries.

V

VERSION - Static variable in class edu.ucsb.nceas.morpho.Morpho
The version of this release of Morpho
VERT_SPLIT_INIT_LOCATION - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
VariablePanel - class edu.ucsb.nceas.morpho.editor.VariablePanel.
VariablePanel is an example of a very plug-in panel to be used by the XML editor.
VariablePanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.VariablePanel
 
ViewDocumentationCommand - class edu.ucsb.nceas.morpho.datapackage.ViewDocumentationCommand.
Class to handle view documentation command
ViewDocumentationCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.ViewDocumentationCommand
 
validate(String) - Method in class edu.ucsb.nceas.morpho.util.DBValidate
validate an xml document against its DTD
validateString(String) - Method in class edu.ucsb.nceas.morpho.util.DBValidate
validate an xml document against its DTD
validateUserInput() - Method in interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageSubPanelAPI
checks that the user has filled in required fields - if not, highlights labels to draw attention to them
validateUserInput() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.CodeDefnPanel
checks that the user has filled in required fields - if not, highlights labels to draw attention to them
validateUserInput() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.IntervalRatioPanel
checks that the user has filled in required fields - if not, highlights labels to draw attention to them
validateUserInput() - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TaxonImportPanel
checks that the user has filled in required fields - if not, highlights labels to draw attention to them
valueForPathChanged(TreePath, Object) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AbstractTreeTableModel
 
verifyCommonName(Taxonomic, JTextField) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
verifyTaxonName(Taxonomic, JTextField, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
verifyTaxonRank(Taxonomic, String, int) - Method in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.Taxonomic
 
visibleRow - Variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.JTreeTable.TreeTableCellRenderer
 

W

WINDOW_CASCADE_X_OFFSET - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
How many pixels to leave at each edge of initial, centered screen?
WINDOW_CASCADE_Y_OFFSET - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
WIZARD_CONTENT_BOLD_FONT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_FONT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_HILITE_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_HILITE_FG_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_LABEL_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_REQD_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_SINGLE_LINE_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_TEXTFIELD_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_CONTENT_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
WIZARD_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
WIZARD_REDUCED_CONTENT_LABEL_DIMS - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_WIDTH - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
WIZARD_X_COORD - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_X_COORD - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
WIZARD_Y_COORD - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
WIZARD_Y_COORD - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
WidgetFactory - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WidgetFactory.
 
WizardContainerFrame - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame.
provides a top-level container for AbstractUIPage objects.
WizardContainerFrame() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardContainerFrame
Constructor
WizardPageLibrary - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageLibrary.
Class WizardPageLibrary - a container for all the wizard pages, that can be retrieved by ID using the getPage() method
WizardPageLibrary(WizardContainerFrame) - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageLibrary
 
WizardPageSubPanelAPI - interface edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardPageSubPanelAPI.
Interface WizardSubPanelAPI
WizardSettings - class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings.
WizardSettings
WizardSettings() - Constructor for class edu.ucsb.nceas.morpho.plugins.datapackagewizard.WizardSettings
 
warning(SAXParseException) - Method in class edu.ucsb.nceas.morpho.util.SAXValidate
Method for handling warnings during a parse
wizardCanceled() - Method in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardListener
callback method when wizard has been canceled before completion
wizardComplete(Node) - Method in interface edu.ucsb.nceas.morpho.plugins.DataPackageWizardListener
callback method when wizard has finished, upon completion
wizardPage - Variable in class edu.ucsb.nceas.morpho.framework.ModalDialog
 
writeEncodedMultipartForm(OutputStream) - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Write the multipart/form-data encoded version of the form to the provided output stream, using a default bufferSize of 4096 bytes for reading in the files.
writeEncodedMultipartForm(OutputStream, int) - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Write the multipart/form-data encoded version of the form to the provided output stream, using the provided bufferSize for reading in the files.
writeObject(Serializable) - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
writeObjects(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
writeToDOM(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
This method writes a DOM Node based on the TreeNode returns the root node of the DOM
writeToWriter(StringBuffer, Writer, boolean) - Static method in class edu.ucsb.nceas.morpho.util.IOUtil
reads character data from the StringBuffer provided, and writes it to the Writer provided, using a buffered write.
writeXMLString(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
write the tree starting at the indicated node to a String

X

XMLFactoryInterface - interface edu.ucsb.nceas.morpho.plugins.XMLFactoryInterface.
This Interface enables calling classes to gain access to resources that are identified by unique String identifiers.
XMLPanels - class edu.ucsb.nceas.morpho.editor.XMLPanels.
 
XMLPanels() - Constructor for class edu.ucsb.nceas.morpho.editor.XMLPanels
Default constructor.
XMLPanels(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.XMLPanels
Constructs a panel tree with the specified root.
XMLPanels(DefaultMutableTreeNode, int) - Constructor for class edu.ucsb.nceas.morpho.editor.XMLPanels
Constructs a panel tree with the specified root.
XMLTransformer - class edu.ucsb.nceas.morpho.util.XMLTransformer.
XMLTransformer to style XML documents using XSLT
XMLTreeCellRenderer - class edu.ucsb.nceas.morpho.editor.XMLTreeCellRenderer.
This class is a simple extension of the DefaultTreeCell Renderer that uses an ImageIcon stored in the NodeInfo UserObject of a tree node as the icon of a node when it is displayed in a tree.
XMLTreeCellRenderer() - Constructor for class edu.ucsb.nceas.morpho.editor.XMLTreeCellRenderer
Constructor
XMLUtil - class edu.ucsb.nceas.morpho.util.XMLUtil.
 
XMLUtil() - Constructor for class edu.ucsb.nceas.morpho.util.XMLUtil
 
XSLTResolverInterface - interface edu.ucsb.nceas.morpho.plugins.XSLTResolverInterface.
This interface enables access to XSLT stylesheets that are identified by unique String DOCTYPE identifiers.
XSLTResolverPlugin - class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin.
Plugin that provides a service to resolve DOCTYPES to XSLT stylesheets
XSLTResolverPlugin() - Constructor for class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin
 
XSLVALU_DISPLAY_ATTRB - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
XSLVALU_DISPLAY_ATTRB is the value to display attributes
XSLVALU_DISPLAY_DATASET - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
XSLVALU_DISPLAY_DATASET is the value to display dataset
XSLVALU_DISPLAY_ENTITY - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
XSLVALU_DISPLAY_ENTITY is the value to display entity
XSLVALU_DISPLAY_PRNT - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
XSLVALU_DISPLAY_PRNT is the value to display print output
xmlAttributesInTreeFlag - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
 
xmlvalidate(String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
used to validate the xml string from the editor before leaving

Y

YES - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 

Z

ZERO - Static variable in class edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.AccessTreeModel
 
ZIP - Static variable in class edu.ucsb.nceas.morpho.query.ExportCommand
Constant String to show state of delete
zoom_in() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
zoom_out() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 

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