Uses of Class
edu.ucsb.nceas.morpho.Morpho

Packages that use Morpho
edu.ucsb.nceas.morpho   
edu.ucsb.nceas.morpho.datapackage   
edu.ucsb.nceas.morpho.datastore   
edu.ucsb.nceas.morpho.editor   
edu.ucsb.nceas.morpho.framework   
edu.ucsb.nceas.morpho.plugins   
edu.ucsb.nceas.morpho.plugins.datapackagewizard   
edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages   
edu.ucsb.nceas.morpho.plugins.metadisplay   
edu.ucsb.nceas.morpho.plugins.printer   
edu.ucsb.nceas.morpho.plugins.xsltresolver   
edu.ucsb.nceas.morpho.query   
edu.ucsb.nceas.morpho.util   
 

Uses of Morpho in edu.ucsb.nceas.morpho
 

Fields in edu.ucsb.nceas.morpho declared as Morpho
static Morpho Morpho.thisStaticInstance
           
 

Uses of Morpho in edu.ucsb.nceas.morpho.datapackage
 

Methods in edu.ucsb.nceas.morpho.datapackage that return Morpho
 Morpho DataViewer.getMorpho()
          Method to get morpho
 Morpho DataViewContainerPanel.getFramework()
          Method to get frame work
 

Methods in edu.ucsb.nceas.morpho.datapackage with parameters of type Morpho
static org.w3c.dom.NodeList PackageUtil.getPathContent(java.io.File f, java.util.Vector paths, Morpho morpho)
          Takes in a vector of paths and searches for each of the paths until a node is found that matches the paths.
static org.w3c.dom.NodeList PackageUtil.getPathContent(java.io.File f, java.lang.String path, Morpho morpho)
          gets the content of a tag in a given xml file with the given path
static org.w3c.dom.Document PackageUtil.getDoc(java.io.File file, Morpho morpho)
          parses file with the dom parser and returns a dom Document
static java.io.File PackageUtil.openFile(java.lang.String name, Morpho morpho)
          opens a file on metacat or local.
static java.io.File PackageUtil.openFile(java.lang.String name, java.lang.String location, Morpho morpho)
          figures out a files location if it is not known and opens it.
static EditorInterface PackageUtil.getEditor(Morpho morpho)
          gets the editor context and returns it
static java.lang.String PackageUtil.addTriplesToTriplesFile(TripleCollection triples, DataPackage dataPackage, Morpho morpho)
          method to add a collection of triples to a triples file.
static java.lang.String PackageUtil.addTriplesToTriplesString(TripleCollection triples, java.lang.String dataPackageString, Morpho morpho)
          method to add a collection of triples to a triples string.
static java.lang.String PackageUtil.deleteTriplesInTriplesFile(java.lang.String searchstring, DataPackage dataPackage, Morpho morpho)
          method to delete triples with a specified string from the triples file
static java.util.Hashtable PackageUtil.getConfigFileTypeAttributes(Morpho morpho, java.lang.String hashby)
          gets the file types from the config file and hashes them by a specified attribute
static void PackageUtil.save(java.lang.String filename, org.w3c.dom.Document doc, java.lang.String doctype, Morpho morpho)
          Save the DOM doc as a file
static void PackageUtil.saveDOM(java.lang.String fileName, org.w3c.dom.Document doc, java.lang.String doctype, Morpho morpho)
          This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
 void EML2Beta6DataPackage.load(java.lang.String location, java.lang.String identifier, Morpho morpho)
           
 void EML200DataPackage.load(java.lang.String location, java.lang.String identifier, Morpho morpho)
           
 void DataViewContainerPanel.setFramework(Morpho cf)
           
 void DataPackagePlugin.initialize(Morpho morpho)
          The plugin must store a reference to the Morpho application in order to be able to call the services available through the framework.
 void DataPackagePlugin.createOpenPreviousVersionDialog(java.lang.String title, int numOfVersion, Morpho morpho, boolean local)
          This method will create a dialog for open previouse version of a datapackage
 java.lang.String DataPackagePlugin.getNextId(Morpho morpho)
          returns the next local id from the config file returns null if configXML was unable to increment the id number
abstract  void AbstractDataPackage.load(java.lang.String location, java.lang.String identifier, Morpho morpho)
          This abstract method loads a datapackage from metacat or the local file system based on an identifier.
protected  java.io.File AbstractDataPackage.getFileWithID(java.lang.String ID, Morpho morpho)
           
 

Constructors in edu.ucsb.nceas.morpho.datapackage with parameters of type Morpho
TripleCollection(java.io.File triplesFile, Morpho morpho)
          parses an xml document and pulls any triples out of it.
OpenPreviousDialog(java.lang.String sTitle, int numVersions, Morpho morpho, boolean local)
           
NewDataFile(java.awt.Frame parent, DataPackage dp, Morpho morpho, java.lang.String entityId)
           
DataViewer(Morpho morpho, java.lang.String sTitle)
           
DataViewer(Morpho morpho, java.lang.String sTitle, java.io.File dataFile)
           
DataPackagePlugin(Morpho morpho)
          Construct of the puglin which will be used in datapackage itself
DataPackage(java.lang.String location, java.lang.String identifier, java.util.Vector relations, Morpho morpho, boolean accessCheckFlag)
          Create a new data package object with an id, location and associated relations.
CreateNewDataPackageCommand(Morpho morpho)
          Constructor of CreateNewDataPackageCommand
AccessionNumber(Morpho morpho)
           
 

Uses of Morpho in edu.ucsb.nceas.morpho.datastore
 

Constructors in edu.ucsb.nceas.morpho.datastore with parameters of type Morpho
MetacatDataStore(Morpho morpho)
          Constructor to create this object in conjunction with a ceartain morpho.
FileSystemDataStore(Morpho morpho)
          create a new FileSystemDataStore for a Morpho
DataStore(Morpho morpho)
          create a new FileSystemDataStore for a Morpho
 

Uses of Morpho in edu.ucsb.nceas.morpho.editor
 

Methods in edu.ucsb.nceas.morpho.editor with parameters of type Morpho
 void EditorPlugin.initialize(Morpho morpho)
          The plugin must store a reference to Morpho in order to be able to call the services available through the framework.
 void DocFrame.initDoc(Morpho finalMorpho, java.lang.String doctext)
          The initialization routine for DocFrame; this method creates a secondary thread where the input XML string is parsed and turned into an editable document.
 void DocFrame.initDoc(Morpho morpho, org.w3c.dom.Node docnode, java.lang.String id, java.lang.String loc)
           
 void DocFrame.initDoc(Morpho morpho, org.w3c.dom.Document doc, java.lang.String id, java.lang.String loc, java.lang.String initNodeName, int initNodeNumber)
           
 

Constructors in edu.ucsb.nceas.morpho.editor with parameters of type Morpho
DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, boolean flag)
          This constructor actual handles the creation of a tree and panel for displaying and editing the information is an XML document, as represented in the String 'doctext'
DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, java.lang.String id, java.lang.String location)
          this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it
DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, java.lang.String id, java.lang.String location, boolean templFlag)
          this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it; includes template flag
DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, java.lang.String id, java.lang.String location, java.lang.String nodeName, java.lang.String nodeValue)
          this version allows one to create a new DocFrame and set the initially selected nodename/nodetext
 

Uses of Morpho in edu.ucsb.nceas.morpho.framework
 

Methods in edu.ucsb.nceas.morpho.framework that return Morpho
static Morpho UIController.getMorpho()
          get Morpho
 

Methods in edu.ucsb.nceas.morpho.framework with parameters of type Morpho
static UIController UIController.initialize(Morpho morpho)
          Initialize the single instance of the UIController, creating it if needed.
 void QueryRefreshInterface.updateSavedQueryMenuItems(Morpho newMorpho)
          This mehod will be called when Morpho switch to another profile.
 void DataPackageInterface.createOpenPreviousVersionDialog(java.lang.String title, int numOfVersion, Morpho morpho, boolean local)
          This method will create a dialog for open previouse version of a datapackage
 java.lang.String DataPackageInterface.getNextId(Morpho morpho)
          returns the next local id from the config file returns null if configXML was unable to increment the id number
 

Constructors in edu.ucsb.nceas.morpho.framework with parameters of type Morpho
ProfileDialog(Morpho cont)
          Construct a dialog and set the framework
ProfileDialog(Morpho cont, boolean modal)
          Construct the dialog
MorphoPrefsDialog(java.awt.Frame parentFrame, Morpho morpho)
           
LoginCommand(Morpho morpho, LoginClientInterface loginClient)
          Constructor
InitialScreen(Morpho morpho, MorphoFrame parentFrame)
           
ConnectionFrame(Morpho cont)
          Construct a frame and set the framework
ConnectionFrame(Morpho cont, boolean modal)
          Construct the frame
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins
 

Methods in edu.ucsb.nceas.morpho.plugins with parameters of type Morpho
 void PluginInterface.initialize(Morpho morpho)
          This method is called after the Plugin has been created in order to allow the plugin a chance to initialize variables, create menus and toolbars, and store a reference to the framework.
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.datapackagewizard
 

Methods in edu.ucsb.nceas.morpho.plugins.datapackagewizard with parameters of type Morpho
 void DataPackageWizardPlugin.initialize(Morpho morpho)
          Required by PluginInterface; called automatically at runtime
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages
 

Methods in edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages with parameters of type Morpho
static java.io.File CodeDefnPanel.getEntityFile(Morpho morpho, AbstractDataPackage adp, int entityIndex)
           
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.metadisplay
 

Methods in edu.ucsb.nceas.morpho.plugins.metadisplay with parameters of type Morpho
 void MetaDisplayPlugin.initialize(Morpho morpho)
          Required by PluginInterface; called automatically at runtime
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.printer
 

Methods in edu.ucsb.nceas.morpho.plugins.printer with parameters of type Morpho
 void PrinterPlugin.initialize(Morpho morpho)
          Required by PluginInterface; called automatically at runtime
 

Constructors in edu.ucsb.nceas.morpho.plugins.printer with parameters of type Morpho
PrintCommand(Morpho morpho, PrinterPlugin prPlugin)
           
PreviewCommand(Morpho morpho, PrinterPlugin prPlugin)
           
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.xsltresolver
 

Methods in edu.ucsb.nceas.morpho.plugins.xsltresolver with parameters of type Morpho
 void XSLTResolverPlugin.initialize(Morpho morpho)
          Required by PluginInterface; called automatically at runtime
 

Uses of Morpho in edu.ucsb.nceas.morpho.query
 

Methods in edu.ucsb.nceas.morpho.query that return Morpho
 Morpho ResultSet.getMorpho()
          Get the morpho attribute
 Morpho ResultSet.getFramework()
          Get a reference to the Morpho application framework
 Morpho Query.getMorpho()
          get the morpho from query
 

Methods in edu.ucsb.nceas.morpho.query with parameters of type Morpho
static void SaveQueryCommand.loadSavedQueries(Morpho myMorpho)
          Load the saved queries into the Search menu so that the user can launch any queries they saved from previosu sessions.
 void QueryPlugin.initialize(Morpho morpho)
          The plugin must store a reference to the Morpho in order to be able to call the services available through the framework.
 void QueryPlugin.updateSavedQueryMenuItems(Morpho newMorpho)
          This method implements from QueryRefreshInterface.
 

Constructors in edu.ucsb.nceas.morpho.query with parameters of type Morpho
SearchCommand(OpenDialogBox myDialogBox, Morpho morpho)
          Constructor of SearcCommand
SaveQueryCommand(Morpho morpho)
          Constructor of SearcCommand
ReviseSearchCommand(Morpho morpho)
          Constructor of SearcCommand
ResultsetHandler(java.io.InputStream resultsXMLStream, SynchronizeVector resultsVector, Morpho morpho, java.lang.String source)
          A contruct will be used in another thread
ResultsetHandler(Morpho morpho, java.lang.String source)
          A constructor to set up a ContentHanler
ResultSet(Query query, java.lang.String source, java.util.Vector vec, Morpho morpho)
          Construct a ResultSet instance from a vector of vectors; for use with LocalQuery
ResultSet(Query query, java.lang.String source, java.io.InputStream resultsXMLStream, Morpho morpho)
          Construct a ResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
QueryDialog(java.awt.Frame parent, Morpho morpho)
          Construct a new instance of the query dialog
Query(java.io.Reader queryspec, Morpho morpho)
          construct an instance of the Query class from an XML Stream
Query(java.lang.String queryspec, Morpho morpho)
          construct an instance of the Query class from an XML String
Query(Morpho morpho)
          construct an instance of the Query class, manually setting the Query constraints rather that readin from an XML stream
OpenPreviousVersionCommand(OpenDialogBox box, Morpho myMorpho)
          Constructor of OpenPreviousVersionCommand
OpenDialogBoxCommand(Morpho morpho)
          Constructor of SearchCommand
OpenDialogBox(MorphoFrame parent, Morpho morpho, Query myQuery)
          Construct a new instance of the query dialog
LocalQuery(Query query, Morpho morpho)
          Basic Constuctor for the class
HeadResultSet(Query query, java.lang.String source, java.io.InputStream resultsXMLStream, Morpho morpho)
          Construct a HeadResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
HeadResultSet(Query query, java.lang.String source, java.util.Vector vec, Morpho morpho)
          Construct a HeadResultSet instance from a vector of vectors; for use with LocalQuery
 

Uses of Morpho in edu.ucsb.nceas.morpho.util
 

Constructors in edu.ucsb.nceas.morpho.util with parameters of type Morpho
DBValidate(java.lang.String parserName, Morpho morpho)
          Construct a new validation object using an OASIS catalog file
 



Copyright © 2000 National Center for Ecological Analysis and Synthesis. All Rights Reserved.