Uses of Class
edu.ucsb.nceas.morpho.Morpho

Packages that use Morpho
edu.ucsb.nceas.morpho.datapackage   
edu.ucsb.nceas.morpho.datapackage.wizard   
edu.ucsb.nceas.morpho.datastore   
edu.ucsb.nceas.morpho.editor   
edu.ucsb.nceas.morpho.framework   
edu.ucsb.nceas.morpho.plugins   
edu.ucsb.nceas.morpho.plugins.metadisplay   
edu.ucsb.nceas.morpho.plugins.xsltresolver   
edu.ucsb.nceas.morpho.query   
edu.ucsb.nceas.morpho.util   
 

Uses of Morpho in edu.ucsb.nceas.morpho.datapackage
 

Methods in edu.ucsb.nceas.morpho.datapackage that return Morpho
 Morpho DataViewer.getMorpho()
          Method to get morpho
 Morpho DataViewContainerPanel.getFramework()
          Method to get frame work
 

Methods in edu.ucsb.nceas.morpho.datapackage with parameters of type Morpho
 void ColumnMetadataEditPanel.setMorpho(Morpho morpho)
           
static org.w3c.dom.NodeList PackageUtil.getPathContent(java.io.File f, java.util.Vector paths, Morpho morpho)
          Takes in a vector of paths and searches for each of the paths until a node is found that matches the paths.
static org.w3c.dom.NodeList PackageUtil.getPathContent(java.io.File f, java.lang.String path, Morpho morpho)
          gets the content of a tag in a given xml file with the given path
static org.w3c.dom.Document PackageUtil.getDoc(java.io.File file, Morpho morpho)
          parses file with the dom parser and returns a dom Document
static java.io.File PackageUtil.openFile(java.lang.String name, Morpho morpho)
          opens a file on metacat or local.
static java.io.File PackageUtil.openFile(java.lang.String name, java.lang.String location, Morpho morpho)
          figures out a files location if it is not known and opens it.
static EditorInterface PackageUtil.getEditor(Morpho morpho)
          gets the editor context and returns it
static java.lang.String PackageUtil.addTriplesToTriplesFile(TripleCollection triples, DataPackage dataPackage, Morpho morpho)
          method to add a collection of triples to a triples file.
static java.lang.String PackageUtil.addTriplesToTriplesString(TripleCollection triples, java.lang.String dataPackageString, Morpho morpho)
          method to add a collection of triples to a triples string.
static java.lang.String PackageUtil.deleteTriplesInTriplesFile(java.lang.String searchstring, DataPackage dataPackage, Morpho morpho)
          method to delete triples with a specified string from the triples file
static java.util.Hashtable PackageUtil.getConfigFileTypeAttributes(Morpho morpho, java.lang.String hashby)
          gets the file types from the config file and hashes them by a specified attribute
static void PackageUtil.save(java.lang.String filename, org.w3c.dom.Document doc, java.lang.String doctype, Morpho morpho)
          Save the DOM doc as a file
static void PackageUtil.saveDOM(java.lang.String fileName, org.w3c.dom.Document doc, java.lang.String doctype, Morpho morpho)
          This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
 void DataViewContainerPanel.setFramework(Morpho cf)
           
 void DataPackagePlugin.initialize(Morpho morpho)
          The plugin must store a reference to the Morpho application in order to be able to call the services available through the framework.
 void DataPackagePlugin.createOpenPreviousVersionDialog(java.lang.String title, int numOfVersion, Morpho morpho, boolean local)
          This method will create a dialog for open previouse version of a datapackage
 java.lang.String DataPackagePlugin.getNextId(Morpho morpho)
          returns the next local id from the config file returns null if configXML was unable to increment the id number
 

Constructors in edu.ucsb.nceas.morpho.datapackage with parameters of type Morpho
AccessionNumber.AccessionNumber(Morpho morpho)
           
DataPackageGUI.DataPackageGUI(Morpho morpho, DataPackage dp)
           
DataViewer.DataViewer(Morpho morpho, java.lang.String sTitle)
           
DataViewer.DataViewer(Morpho morpho, java.lang.String sTitle, java.io.File dataFile)
           
OpenPreviousDialog.OpenPreviousDialog(java.lang.String sTitle, int numVersions, Morpho morpho, boolean local)
           
NewDataFile.NewDataFile(java.awt.Frame parent, DataPackage dp, Morpho morpho, java.lang.String entityId)
           
CreateNewDataPackageCommand.CreateNewDataPackageCommand(Morpho morpho)
          Constructor of CreateNewDataPackageCommand
DataPackagePlugin.DataPackagePlugin(Morpho morpho)
          Construct of the puglin which will be used in datapackage itself
TripleCollection.TripleCollection(java.io.File triplesFile, Morpho morpho)
          parses an xml document and pulls any triples out of it.
DataPackage.DataPackage(java.lang.String location, java.lang.String identifier, java.util.Vector relations, Morpho morpho, boolean accessCheckFlag)
          Create a new data package object with an id, location and associated relations.
AddMetadataWizard.AddMetadataWizard(Morpho morpho, MorphoFrame packageFrame)
          Construct a dialog and set the framework
AddMetadataWizard.AddMetadataWizard(Morpho morpho, boolean modal, DataPackage dataPackage, MorphoFrame packageFrame, java.lang.String showImport)
          Construct the dialog
 

Uses of Morpho in edu.ucsb.nceas.morpho.datapackage.wizard
 

Constructors in edu.ucsb.nceas.morpho.datapackage.wizard with parameters of type Morpho
PackageWizardShell.PackageWizardShell(Morpho morpho)
           
PackageWizardShell.PackageWizardShell(Morpho morpho, int startingFrame, AddMetadataWizard amdw)
           
 

Uses of Morpho in edu.ucsb.nceas.morpho.datastore
 

Constructors in edu.ucsb.nceas.morpho.datastore with parameters of type Morpho
DataStore.DataStore(Morpho morpho)
          create a new FileSystemDataStore for a Morpho
FileSystemDataStore.FileSystemDataStore(Morpho morpho)
          create a new FileSystemDataStore for a Morpho
MetacatDataStore.MetacatDataStore(Morpho morpho)
          Constructor to create this object in conjunction with a ceartain morpho.
 

Uses of Morpho in edu.ucsb.nceas.morpho.editor
 

Methods in edu.ucsb.nceas.morpho.editor with parameters of type Morpho
 void EditorPlugin.initialize(Morpho morpho)
          The plugin must store a reference to Morpho in order to be able to call the services available through the framework.
 void DocFrame.initDoc(Morpho finalMorpho, java.lang.String doctext, boolean flag)
          Description of the Method
 

Constructors in edu.ucsb.nceas.morpho.editor with parameters of type Morpho
DocFrame.DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, boolean flag)
          This constructor actual handles the creation of a tree and panel for displaying and editing the information is an XML document, as represented in the String 'doctext'
DocFrame.DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, java.lang.String id, java.lang.String location)
          this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it
DocFrame.DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, java.lang.String id, java.lang.String location, boolean templFlag)
          this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it; includes template flag
DocFrame.DocFrame(Morpho morpho, java.lang.String sTitle, java.lang.String doctext, java.lang.String id, java.lang.String location, java.lang.String nodeName, java.lang.String nodeValue)
          this version allows one to create a new DocFrame and set the initially selected nodename/nodetext
 

Uses of Morpho in edu.ucsb.nceas.morpho.framework
 

Methods in edu.ucsb.nceas.morpho.framework that return Morpho
static Morpho UIController.getMorpho()
          get Morpho
 

Methods in edu.ucsb.nceas.morpho.framework with parameters of type Morpho
static UIController UIController.initialize(Morpho morpho)
          Initialize the single instance of the UIController, creating it if needed.
 void QueryRefreshInterface.updateSavedQueryMenuItems(Morpho newMorpho)
          This mehod will be called when Morpho switch to another profile.
 void DataPackageInterface.createOpenPreviousVersionDialog(java.lang.String title, int numOfVersion, Morpho morpho, boolean local)
          This method will create a dialog for open previouse version of a datapackage
 java.lang.String DataPackageInterface.getNextId(Morpho morpho)
          returns the next local id from the config file returns null if configXML was unable to increment the id number
 

Constructors in edu.ucsb.nceas.morpho.framework with parameters of type Morpho
MorphoPrefsDialog.MorphoPrefsDialog(java.awt.Frame parentFrame, Morpho morpho)
           
InitialScreen.InitialScreen(Morpho morpho, MorphoFrame parentFrame)
           
ConnectionFrame.ConnectionFrame(Morpho cont)
          Construct a frame and set the framework
ConnectionFrame.ConnectionFrame(Morpho cont, boolean modal)
          Construct the frame
ProfileDialog.ProfileDialog(Morpho cont)
          Construct a dialog and set the framework
ProfileDialog.ProfileDialog(Morpho cont, boolean modal)
          Construct the dialog
LoginCommand.LoginCommand(Morpho morpho, LoginClientInterface loginClient)
          Constructor
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins
 

Methods in edu.ucsb.nceas.morpho.plugins with parameters of type Morpho
 void PluginInterface.initialize(Morpho morpho)
          This method is called after the Plugin has been created in order to allow the plugin a chance to initialize variables, create menus and toolbars, and store a reference to the framework.
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.metadisplay
 

Methods in edu.ucsb.nceas.morpho.plugins.metadisplay with parameters of type Morpho
 void MetaDisplayPlugin.initialize(Morpho morpho)
          Required by PluginInterface; called automatically at runtime
 

Uses of Morpho in edu.ucsb.nceas.morpho.plugins.xsltresolver
 

Methods in edu.ucsb.nceas.morpho.plugins.xsltresolver with parameters of type Morpho
 void XSLTResolverPlugin.initialize(Morpho morpho)
          Required by PluginInterface; called automatically at runtime
 

Uses of Morpho in edu.ucsb.nceas.morpho.query
 

Methods in edu.ucsb.nceas.morpho.query that return Morpho
 Morpho ResultSet.getFramework()
          Get a reference to the Morpho application framework
 

Methods in edu.ucsb.nceas.morpho.query with parameters of type Morpho
static void SaveQueryCommand.loadSavedQueries(Morpho myMorpho)
          Load the saved queries into the Search menu so that the user can launch any queries they saved from previosu sessions.
 void QueryPlugin.initialize(Morpho morpho)
          The plugin must store a reference to the Morpho in order to be able to call the services available through the framework.
 void QueryPlugin.updateSavedQueryMenuItems(Morpho newMorpho)
          This method implements from QueryRefreshInterface.
 

Constructors in edu.ucsb.nceas.morpho.query with parameters of type Morpho
ReviseSearchCommand.ReviseSearchCommand(Morpho morpho)
          Constructor of SearcCommand
Query.Query(java.io.Reader queryspec, Morpho morpho)
          construct an instance of the Query class from an XML Stream
Query.Query(java.lang.String queryspec, Morpho morpho)
          construct an instance of the Query class from an XML String
Query.Query(Morpho morpho)
          construct an instance of the Query class, manually setting the Query constraints rather that readin from an XML stream
LocalQuery.LocalQuery(Query query, Morpho morpho)
          Basic Constuctor for the class
SaveQueryCommand.SaveQueryCommand(Morpho morpho)
          Constructor of SearcCommand
QueryDialog.QueryDialog(java.awt.Frame parent, Morpho morpho)
          Construct a new instance of the query dialog
OpenPreviousVersionCommand.OpenPreviousVersionCommand(OpenDialogBox box, Morpho myMorpho)
          Constructor of OpenPreviousVersionCommand
OpenDialogBoxCommand.OpenDialogBoxCommand(Morpho morpho)
          Constructor of SearchCommand
ResultSet.ResultSet(Query query, java.lang.String source, java.util.Vector vec, Morpho morpho)
          Construct a ResultSet instance from a vector of vectors; for use with LocalQuery
ResultSet.ResultSet(Query query, java.lang.String source, java.io.InputStream resultsXMLStream, Morpho morpho)
          Construct a ResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
HeadResultSet.HeadResultSet(Query query, java.lang.String source, java.io.InputStream resultsXMLStream, Morpho morpho)
          Construct a HeadResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
HeadResultSet.HeadResultSet(Query query, java.lang.String source, java.util.Vector vec, Morpho morpho)
          Construct a HeadResultSet instance from a vector of vectors; for use with LocalQuery
SearchCommand.SearchCommand(OpenDialogBox myDialogBox, Morpho morpho)
          Constructor of SearcCommand
OpenDialogBox.OpenDialogBox(MorphoFrame parent, Morpho morpho, Query myQuery)
          Construct a new instance of the query dialog
 

Uses of Morpho in edu.ucsb.nceas.morpho.util
 

Constructors in edu.ucsb.nceas.morpho.util with parameters of type Morpho
DBValidate.DBValidate(java.lang.String parserName, Morpho morpho)
          Construct a new validation object using an OASIS catalog file
 



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