A B C D E F G H I K L M N O P Q R S T U V W X Y Z

A

AccessionNumber - class edu.ucsb.nceas.morpho.datapackage.AccessionNumber.
Class that implements Accession Number utility functions for morpho
AccessionNumber(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
 
accessionRefLabel - Variable in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
action(Event, Object) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
the only action we handle is a in one of TextFields
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
Handles actions from all components in the Container
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
Handles actions from all components in the Container
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
Handles actions from all components in the Container
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
handles the actions from the menus if this package wizard is run in stand alone mode.
actionPerformed(ActionEvent) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
actionPerformed() method required by ActionListener interface
add(HistoryItem) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
add the String identifier to the most-recent slot in history
addActionListener(ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Register a java.awt.event.ActionListener to listen for events
addActionListener(ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Register a java.awt.event.ActionListener to listen for events
addChild(QueryGroup) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Add a child QueryGroup to this QueryGroup
addChild(QueryTerm) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Add a child QueryTerm to this QueryGroup
addChild(String, int, String, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Add a child node to the specified parent
addChildNode(BasicNode) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Add a child node to this node
addColumn() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
add a column after the last current column new column is filled with spaces
addConnectionListener(ConnectionListener) - Method in class edu.ucsb.nceas.morpho.Morpho
This method is called by plugins to register a listener for changes in the Connection status.
AddDocumentationCommand - class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand.
Class to handle add documentation command
AddDocumentationCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand
Constructor of refreshCommand There is no parameter, means it will refresh current active morpho frame
addEditingCompleteListener(EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Register an EditingCompleteListener to listen for editor events
addEditingCompleteListener(EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Register an EditingCompleteListener to listen for editor events
addElement(Serializable) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
addGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Add a GUIAction to the menu and toolbar for this frame.
addGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.UIController
Add a menu item and optionally a toolbar button by registering an instance of GUIAction.
addingNewDatAWizardCanceled() - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
addingNewDataWizardCompleted(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
handler for return from the PackageWizardShell class when a new data file and associated metadata have been created The files vector is actually a vector of vectors with each intenal vector having a id, a file, and a type
AddMetadataWizard - class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard.
A graphical window for adding new files to a package
AddMetadataWizard(Morpho, boolean, DataPackage, MorphoFrame, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
Construct the dialog
AddMetadataWizard(Morpho, MorphoFrame) - Constructor for class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
Construct a dialog and set the framework
addNotify() - Method in class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
addNotify() - Method in class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
addNotify() - Method in class edu.ucsb.nceas.morpho.framework.HTMLBrowser
Notifies this component that it has been added to a container This method should be called by Container.add, and not by user code directly.
addNotify() - Method in class edu.ucsb.nceas.morpho.framework.SplashFrame
Override addNotify -- vis cafe does this, but why?
addNotify() - Method in class edu.ucsb.nceas.morpho.framework.ConnectionFrame
Adjust the window size
addNotify() - Method in class edu.ucsb.nceas.morpho.framework.TextImportResultsFrame
 
addProfileAddedListener(ProfileAddedListener) - Method in class edu.ucsb.nceas.morpho.Morpho
Add a ProfileAddedListener to listen for new profile additions.
addRow(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
add a row to the end of the data vec is assumed to be a Vector of strings
addService(Class, ServiceProvider) - Method in class edu.ucsb.nceas.morpho.plugins.ServiceController
This method is called by plugins to register a particular service that the plugin can perform.
addStateChangeListener(String, StateChangeListener) - Method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
This method is called by objects to register a listener for changes in the application state.
addToPath(PathElementInterface) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
add a PathElement object to the path
addTransformerProperty(String, String) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
adds a name/value pair to the Properties object containing the properties to be set for the transformer
addTriple(Triple) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
Add a single triple to this collection
addTriplesToTriplesFile(TripleCollection, DataPackage, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
method to add a collection of triples to a triples file.
addTriplesToTriplesString(TripleCollection, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
method to add a collection of triples to a triples string.
addWindow(String) - Method in class edu.ucsb.nceas.morpho.framework.UIController
This method is called by plugins to get a new window that is an instance of MorphoFrame.
AFTER - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
 
AFTER - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
 
ALERT_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
General alert text (eg shown in data view if data file not readable)
append(PathElementInterface) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
add the PathElement to the end of the path
applySelection(JTable, String[][]) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
ascending - Variable in class edu.ucsb.nceas.morpho.query.CellComparator
 
ASCENDING - Static variable in class edu.ucsb.nceas.morpho.util.SortableJTable
 
AttributeEditDialog - class edu.ucsb.nceas.morpho.editor.AttributeEditDialog.
This is a simple dialog which allows the viewing/editing of the attributes of an XML element as stored in the DocFrame JTree XML editor.
AttributeEditDialog() - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
AttributeEditDialog(Frame) - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
AttributeEditDialog(Frame, String, DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
dialog is given a DefaultMutableTreeNode (nd) with the attribute data to be displayed
AttributeEditDialog(String) - Constructor for class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
authorRefLabel - Variable in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 

B

BACKBUTTON_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
BACKBUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
BackCommand - class edu.ucsb.nceas.morpho.plugins.metadisplay.BackCommand.
 
BACKGROUND_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
basicInfoPanel - Variable in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
BasicNode - class edu.ucsb.nceas.morpho.query.BasicNode.
A Class that represents an XML node and its contents
BasicNode() - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BasicNode(long, String, long, int) - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BasicNode(String) - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BasicNode(String, long, int) - Constructor for class edu.ucsb.nceas.morpho.query.BasicNode
Construct a Basic Node
BEFORE - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
 
BEFORE - Static variable in class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
 
BLANK - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
BLANK_HTML_PAGE - Static variable in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
 
blankIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
the icon for blank, nothing there
BOTH - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
used to signify that this package is stored on metacat and locally.
BOTTOMLINE_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
broadcastStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Broadcast the stored StateChangeEvent
broadcastStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Broadcast the stored StateChangeEvent
broadcastStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Broadcast the stored StateChangeEvent
broadcastStoredStateChangeEvent() - Method in interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent
Broadcast the stored StateChangeEvent
buildTree(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.DTDTree
 
ButterflyFlapCoordinator - interface edu.ucsb.nceas.morpho.framework.ButterflyFlapCoordinator.
Interface for coordinate butterfly flap
BUTTON_DISABLED_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
BUTTON_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 

C

CacheAccessException - exception edu.ucsb.nceas.morpho.datastore.CacheAccessException.
This exception is thrown when their is a problem accessing the cache
CacheAccessException(String) - Constructor for class edu.ucsb.nceas.morpho.datastore.CacheAccessException
 
cachedir - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
caculateCenterX(double, int, int) - Static method in class edu.ucsb.nceas.morpho.framework.HelpCommand
 
caculateCenterY(double, int, int) - Static method in class edu.ucsb.nceas.morpho.framework.HelpCommand
 
CancelCommand - class edu.ucsb.nceas.morpho.query.CancelCommand.
Class to handle cancel command
CancelCommand(Window) - Constructor for class edu.ucsb.nceas.morpho.query.CancelCommand
Constructor of CancelCommand
CellComparator - class edu.ucsb.nceas.morpho.query.CellComparator.
This class to compare two vecotors which is two dimentions
CellComparator(int, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.CellComparator
Constructor of cellComparator
CHANGE_PROFILE_LABEL_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.query.Query
callback method used by the SAX Parser when the text sequences of an xml stream are detected.
characters(char[], int, int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
SAX handler callback that is called for character content of an element when parsing an XML document.
checkForService(Class) - Method in class edu.ucsb.nceas.morpho.plugins.ServiceController
This method is called by plugins to determine if a particular service has been registered and is available.
checkJavaVersion() - Method in class edu.ucsb.nceas.morpho.Morpho
Description of the Method
checkTriplesForAccess() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
clear() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
Clears all PathElements, resulting in an empty path,
clearLogStack() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
clearValueAt(JTable, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
CLIENT_SCREEN_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall screen height (in pixels)
CLIENT_SCREEN_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall screen width (in pixels)
CLIPBOARD_HAS_DATA_TO_PASTE - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the Paste command has data in the System clipboard to 'Paste'.
CLIPBOARD_HAS_NO_DATA_TO_PASTE - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the Paste command has no data in the System clipboard to 'Paste'.
cloneAction() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Make a clone of the GUIAction instance.
cloneNodeInfo() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
CLOSE_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
descriptive constant used in ActionEvents generated by the display Signifies that user has issued a command to close the display
close() - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
CLOSEBUTTON_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
CLOSEBUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
CloseCommand - class edu.ucsb.nceas.morpho.plugins.metadisplay.CloseCommand.
 
colAverage - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colDataToFields() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
colDefinition - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colMax - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colMin - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colMissingValue - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colName - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colNumber - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colNumUniqueItems - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colPrecision - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTextDefinition - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTextPattern - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTextSource - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colTitle - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colType - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
ColumnData - class edu.ucsb.nceas.morpho.framework.ColumnData.
class to store all the metadate about the data in a column of the table Previously, this was an inner private class defined as part of the TextImportWizard.
ColumnMetadataEditPanel - class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel.
A panel that displays the metadata for a column in a data table
ColumnMetadataEditPanel() - Constructor for class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
ColumnSortableTableModel - interface edu.ucsb.nceas.morpho.util.ColumnSortableTableModel.
Interface for ColumnSortableTableModel
colUniqueItemsDefs - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colUniqueItemsList - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
colUnits - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
Command - interface edu.ucsb.nceas.morpho.util.Command.
 
compare(Object, Object) - Method in class edu.ucsb.nceas.morpho.query.CellComparator
The method to compare twso vectors
ConfigXML - class edu.ucsb.nceas.morpho.framework.ConfigXML.
This class is designed to store configuration information in an XML file.
ConfigXML(InputStream) - Constructor for class edu.ucsb.nceas.morpho.framework.ConfigXML
String passed to the creator is the XML config file name
ConfigXML(String) - Constructor for class edu.ucsb.nceas.morpho.framework.ConfigXML
String passed to the creator is the XML config file name
connectionBusy - Static variable in class edu.ucsb.nceas.morpho.Morpho
flag set to indicate that connection to metacat is busy used by doPing to avoid thread problem
connectionChanged(boolean) - Method in interface edu.ucsb.nceas.morpho.framework.ConnectionListener
This method is called if there is a change in the connection status.
connectionChanged(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
Implement the ConnectionListener interface so we know when to refresh queries.
ConnectionFrame - class edu.ucsb.nceas.morpho.framework.ConnectionFrame.
A graphical window for obtaining login information from the user and logging into Metacat
ConnectionFrame(Morpho) - Constructor for class edu.ucsb.nceas.morpho.framework.ConnectionFrame
Construct a frame and set the framework
ConnectionFrame(Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.ConnectionFrame
Construct the frame
ConnectionListener - interface edu.ucsb.nceas.morpho.framework.ConnectionListener.
Any object that is interested in the status of the morpho framework connection should implement this interface and register with the framework to be notified of changes, including changes to the username and connection status.
construct() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Compute the value to be returned by the get method.
container - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
containsExtendedSQL() - Method in class edu.ucsb.nceas.morpho.query.Query
Returns true if the parsed query contains and extended xml query (i.e.
containsTriple(Triple) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns true if the collection contains triple, false otherwise
copy(File, File) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given Files as inputs
copy(File, File, Hashtable) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given Files as inputs, and substitute special tokens with their corresponding values
copy(String, String) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given their file names as inputs
copy(String, String, Hashtable) - Static method in class edu.ucsb.nceas.morpho.framework.FileUtils
Copy one file to another, given their file names as inputs, and substitute special tokens with their corresponding values
COPYKEY - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
String for accelerator key
counter - Static variable in class edu.ucsb.nceas.morpho.editor.DocFrame
counter for name
CREATE_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING ONE OR MORE ENTITIES has been opened
CREATE_DATAPACKAGE_FRAME_NO_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, but that no previous versions of the selected package are available
CREATE_DATAPACKAGE_FRAME_SYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, and that the local and network versions of the package *are* in sync
CREATE_DATAPACKAGE_FRAME_UNSYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, and that the local and network versions of the package are *not* in sync
CREATE_DATAPACKAGE_FRAME_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened, and that previous versions of the selected package *are* available
CREATE_EDITABLE_ENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING ONE OR MORE ASCII ENTITIES has been opened
CREATE_ENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING ENTITIES has been opened
CREATE_NOENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage CONTAINING NO ENTITIES OR ASCII DATA has been opened
CREATE_NONEDITABLE_ENTITY_DATAPACKAGE_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a datapackage has been opened CONTAINING ONE OR MORE ENTITIES THAT ARE NOT EDITABLE (e.g.
CREATE_SEARCH_RESULT_FRAME - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a search result frame has been opened
createBasicInfoPanel() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
creates the basicinfopanel
CREATEDATEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of createdate in resultsVector
createDefaultModel() - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Method to create default model for text field
createDomParser() - Static method in class edu.ucsb.nceas.morpho.Morpho
Set up a DOM parser for reading an XML document
CreateNewDataPackageCommand - class edu.ucsb.nceas.morpho.datapackage.CreateNewDataPackageCommand.
Class to handle create new data package command
CreateNewDataPackageCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.CreateNewDataPackageCommand
Constructor of CreateNewDataPackageCommand
createObject(Constructor, Object[]) - Static method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
createOpenPreviousVersionDialog(String, int, Morpho, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
This method will create a dialog for open previouse version of a datapackage
createOpenPreviousVersionDialog(String, int, Morpho, boolean) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method will create a dialog for open previouse version of a datapackage
createSaxParser(ContentHandler, ErrorHandler) - Static method in class edu.ucsb.nceas.morpho.Morpho
Set up a SAX parser for reading an XML document
createXMLAttributeString() - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
Hardcoded routine to create an XML Attribute metadata string based on data ---BAD PRACTICE--- should use config to get info
createXMLEntityString() - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
Hardcoded routine to create an XML Table Entity metadata string based on data ---BAD PRACTICE--- should use config to get info
createXMLPhysicalString() - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
Hardcoded routine to create an XML eml-physical metadata string based on data ---BAD PRACTICE--- should use config to get info
CSS_PATH_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold path to css stylesheets
CUSTOM_GRAY - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
CUTKEY - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 

D

datadir - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
DATAMENUPOSITION - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Constant int for data menu position
DataPackage - class edu.ucsb.nceas.morpho.datapackage.DataPackage.
class that represents a data package.
DataPackage(String, String, Vector, Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackage
Create a new data package object with an id, location and associated relations.
DATAPACKAGEFRAME - Static variable in class edu.ucsb.nceas.morpho.framework.MorphoFrame
 
DataPackageGUI - class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI.
Class that implements a GUI to edit a data package
DataPackageGUI(Morpho, DataPackage) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
DataPackageInterface - interface edu.ucsb.nceas.morpho.framework.DataPackageInterface.
All component plugins that handle access to data packages should implement this interface and register themselves as a service provider for the interface withthe framework.
DataPackagePanel - class edu.ucsb.nceas.morpho.editor.DataPackagePanel.
DataPackagePanel is an example of a plug-in panel to be used by the XML editor.
DataPackagePanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.DataPackagePanel
 
DataPackagePlugin - class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin.
Class that implements the plugin for package editing
DataPackagePlugin() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Construct the plugin.
DataPackagePlugin(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Construct of the puglin which will be used in datapackage itself
DataStore - class edu.ucsb.nceas.morpho.datastore.DataStore.
creates an abstract class for getting files from any dataStore using the same methods.
DataStore(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datastore.DataStore
create a new FileSystemDataStore for a Morpho
DataStoreInterface - interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface.
creates an interface for getting files from any dataStore using the same methods.
DataViewContainerPanel - class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel.
A panel that presents a data-centric view of a dataPackage.
DataViewContainerPanel() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
DataViewContainerPanel(DataPackage, DataPackageGUI) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
DataViewer - class edu.ucsb.nceas.morpho.datapackage.DataViewer.
 
DataViewer() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DataViewer(Morpho, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DataViewer(Morpho, String, File) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DataViewer(String, String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
DBValidate - class edu.ucsb.nceas.morpho.util.DBValidate.
Name: DBValidate.java Purpose: A Class that validates XML documents This class is designed to be parser independent i.e.
DBValidate(String) - Constructor for class edu.ucsb.nceas.morpho.util.DBValidate
Construct a new validation object
DBValidate(String, Morpho) - Constructor for class edu.ucsb.nceas.morpho.util.DBValidate
Construct a new validation object using an OASIS catalog file
debug(int, String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
debug(int, String) - Static method in class edu.ucsb.nceas.morpho.util.Log
Print debugging messages based on severity level, where severity level 1 are the most critical and higher numbers are more trivial messages.
DECENDING - Static variable in class edu.ucsb.nceas.morpho.util.SortableJTable
 
DEFAULT_CSS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold default css stylesheet name
DEFAULT_WINDOW_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall height (pixels) of MorphoFrame (after making allowance for client screen height, taskbar etc)
DEFAULT_WINDOW_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
overall width (pixels) of MorphoFrame (after making allowance for client screen width etc)
delete() - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
delete() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
delete(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Deletes the package from the specified location
delete(String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Deletes the package.
delete(String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to delete a datapackage from metacat or the local disk.
deleteColumn(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
deletes the indicated column
DeleteColumnCommand - class edu.ucsb.nceas.morpho.datapackage.DeleteColumnCommand.
Class to handle delete a cloumn command
DeleteColumnCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DeleteColumnCommand
Constructor of Import data command
DeleteCommand - class edu.ucsb.nceas.morpho.query.DeleteCommand.
Class to handle delete local copy command
DeleteCommand(OpenDialogBox, JDialog, MorphoFrame, String, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.DeleteCommand
Constructor of DeleteCommand
DeleteDialog - class edu.ucsb.nceas.morpho.query.DeleteDialog.
A dialog box for user delete datapakcage
DeleteDialog(MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.DeleteDialog
Construct a new instance of the delete dialog which parent is morphoframe
DeleteDialog(OpenDialogBox, MorphoFrame, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.DeleteDialog
Construct a new instance of the delete dialog which parent is open dialog
deleteFile(String) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
Deletes the file with an id of name.
deleteFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
deleteFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
deletes a file from the local file system.
deleteFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
deletes a file from metacat.
deletePrevious() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
Deletes the String identifier that was most recently added to history
deleteRow(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
delete a row at indicated position vec is assumed to be a Vector of strings
DeleteRowCommand - class edu.ucsb.nceas.morpho.datapackage.DeleteRowCommand.
Class to handle delete a row command
DeleteRowCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.DeleteRowCommand
Constructor of delete a row command
deleteTriplesInTriplesFile(String, DataPackage, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
method to delete triples with a specified string from the triples file
DELIMITER - Static variable in class edu.ucsb.nceas.morpho.framework.FileUtils
 
DelimiterField - class edu.ucsb.nceas.morpho.datapackage.DelimiterField.
A class to handle if input delimiter into text fild
DelimiterField.NoDelimiterDocument - class edu.ucsb.nceas.morpho.datapackage.DelimiterField.NoDelimiterDocument.
 
DelimiterField.NoDelimiterDocument(DelimiterField) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DelimiterField.NoDelimiterDocument
 
DelimiterField(JPanel, String, String, int) - Constructor for class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Constructor of DelimiterField
DFHPanel - class edu.ucsb.nceas.morpho.editor.DFHPanel.
DFHPanel is an example of a class that can be dynamically loaded at run time to edit a specific part of an XML document tree.
DFHPanel() - Constructor for class edu.ucsb.nceas.morpho.editor.DFHPanel
Default constructor.
DFHPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.DFHPanel
The primary constructor used to dynamically load the class.
disableOpenButton() - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to disable the open button
display(String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to display metadata in an existing instance of a visual component (metadata identified by the identifier parameter).
display(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to display metadata in an existing instance of a visual component (metadata identified by the identifier parameter).
display(String, Reader) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to display metadata in an existing instance of a visual component (metadata is provided as a Reader (the "XMLDocument" parameter), and a required corresponding unique identifier parameter) that can subsequently be used by this component to get the latest instance of the same "XMLDocument" from the XMLFactoryInterface.
display(String, Reader) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to display metadata in an existing instance of a visual component (metadata is provided as a Reader (the "XMLDocument" parameter), and a required corresponding unique identifier parameter) that can subsequently be used by this component to get the latest instance of the same "XMLDocument" from the XMLFactoryInterface.
displayPrevious() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to redisplay the previous metadata document from History, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
displayPrevious() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to redisplay the previous metadata document from History, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
doAddFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
doc - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
DocFrame - class edu.ucsb.nceas.morpho.editor.DocFrame.
DocFrame is a container for an XML editor which shows combined outline and nested panel views of an XML document.
DocFrame() - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
This constructor builds the contents of the DocFrame Display
DocFrame(File) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
Constructor for the DocFrame object
DocFrame(Morpho, String, String, boolean) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
This constructor actual handles the creation of a tree and panel for displaying and editing the information is an XML document, as represented in the String 'doctext'
DocFrame(Morpho, String, String, String, String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it
DocFrame(Morpho, String, String, String, String, boolean) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
this version of the constructor is needed so that each DocFrame can 'remember' the id and location parameters used to create it; includes template flag
DocFrame(Morpho, String, String, String, String, String, String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
this version allows one to create a new DocFrame and set the initially selected nodename/nodetext
DocFrame(String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
Constructor which adds a title string to the Frame
DocFrame(String, String) - Constructor for class edu.ucsb.nceas.morpho.editor.DocFrame
Constructor which adds a title and passes the xml to display as a string; puts XML into tree
DOCIDINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of docid in resultsVector
DOCNAMEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of doc name in resultsVector
DOCTYPEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of doc type in resultsVector
DocumentNotFoundException - exception edu.ucsb.nceas.morpho.plugins.DocumentNotFoundException.
This exception is thrown when a requested document cannot be found
DocumentNotFoundException(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.DocumentNotFoundException
 
DOMEditorInterface - interface edu.ucsb.nceas.morpho.plugins.DOMEditorInterface.
All component plugins that require the editing of XML documents should implement this interface and register themselves as a service provider for the interface with the framework.
doQuery(MorphoFrame, Query) - Static method in class edu.ucsb.nceas.morpho.query.SearchCommand
Run the search query
download() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Downloads a metacat package to the local disk
download(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Downloads the package from metacat.
download(String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to download a datapackage from metacat to the local disk.
dtd - Variable in class edu.ucsb.nceas.morpho.editor.DTDTree
 
dtdtree - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
Description of the Field
DTDTree - class edu.ucsb.nceas.morpho.editor.DTDTree.
class for creating a treeModel based on structure defined in DTD.
DTDTree() - Constructor for class edu.ucsb.nceas.morpho.editor.DTDTree
 
DTDTree(String) - Constructor for class edu.ucsb.nceas.morpho.editor.DTDTree
 
dtm - Variable in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
dtm - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 

E

EDIT_BEGIN_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
descriptive constant used in ActionEvents generated by the display Signifies that the user has issued a command to edit the metadata
EDITBUTTON_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
EDITBUTTON_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Settings for MetaData Viewer panels
EditColumnMetaDataCommand - class edu.ucsb.nceas.morpho.datapackage.EditColumnMetaDataCommand.
Class to handle edit column meta data command
EditColumnMetaDataCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.EditColumnMetaDataCommand
Constructor of edit column meta data command
EditCommand - class edu.ucsb.nceas.morpho.plugins.metadisplay.EditCommand.
 
editEntityButton - Variable in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
 
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
 
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
editingCanceled(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.EditingCompleteListener
this method handles canceled editing
editingCanceled(String, String, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Required by EditingCompleteListener Interface: this method handles canceled editing
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
this is called whenever the editor exits.
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
this is called whenever the editor exits.
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
this is called whenever the editor exits.
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
this is called whenever the editor exits.
editingCompleted(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.EditingCompleteListener
This method is called when editing is complete
editingCompleted(String, String, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Required by EditingCompleteListener Interface: This method is called when editing is complete
EditingCompleteListener - interface edu.ucsb.nceas.morpho.framework.EditingCompleteListener.
Any object that is interested in being notified when editing of an XML document is complete and obtaining a copy of the edited (new) document should implement this interface and register with the editor document
EDITMENUPOSITION - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Constant int for edit menu position
EditorInterface - interface edu.ucsb.nceas.morpho.framework.EditorInterface.
All component plugins that require the editing of XML documents should implement this interface and register themselves as a service provider for the interface with the framework.
EditorPlugin - class edu.ucsb.nceas.morpho.editor.EditorPlugin.
 
EditorPlugin() - Constructor for class edu.ucsb.nceas.morpho.editor.EditorPlugin
Construct the editor plugin.
edu.ucsb.nceas.morpho - package edu.ucsb.nceas.morpho
 
edu.ucsb.nceas.morpho.datapackage - package edu.ucsb.nceas.morpho.datapackage
 
edu.ucsb.nceas.morpho.datapackage.wizard - package edu.ucsb.nceas.morpho.datapackage.wizard
 
edu.ucsb.nceas.morpho.datastore - package edu.ucsb.nceas.morpho.datastore
 
edu.ucsb.nceas.morpho.editor - package edu.ucsb.nceas.morpho.editor
 
edu.ucsb.nceas.morpho.exception - package edu.ucsb.nceas.morpho.exception
 
edu.ucsb.nceas.morpho.framework - package edu.ucsb.nceas.morpho.framework
 
edu.ucsb.nceas.morpho.plugins - package edu.ucsb.nceas.morpho.plugins
 
edu.ucsb.nceas.morpho.plugins.metadisplay - package edu.ucsb.nceas.morpho.plugins.metadisplay
 
edu.ucsb.nceas.morpho.plugins.xsltresolver - package edu.ucsb.nceas.morpho.plugins.xsltresolver
 
edu.ucsb.nceas.morpho.query - package edu.ucsb.nceas.morpho.query
 
edu.ucsb.nceas.morpho.util - package edu.ucsb.nceas.morpho.util
 
elementAt(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
enableOpenButton() - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to enable the open button
endDocument() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
 
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.query.Query
callback method used by the SAX Parser when the end tag of an element is detected.
endElement(String, String, String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
SAX handler callback that is called upon the end of an element when parsing an XML document.
endPrefixMapping(String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
ENTITY_CSS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold entity/attribute css stylesheet name
entityFile - Variable in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
 
EntityGUI - class edu.ucsb.nceas.morpho.datapackage.EntityGUI.
Class that implements a GUI to edit an entity
EntityGUI(DataPackage, String, String, DataPackageGUI, Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.EntityGUI
Creates a new entity editor.
entityitems - Variable in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
entityPanel - Variable in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
 
enumChoice - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumCodeVector - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumDefinitionVector - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumSourceVector - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
enumTableToColData() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
EVENT_GLOBAL - Static variable in class edu.ucsb.nceas.morpho.util.GUIAction
Public constant to denote that a GUIAction should consume events originating from any frame, not just its own
EVENT_LOCAL - Static variable in class edu.ucsb.nceas.morpho.util.GUIAction
Public constant to denote that a GUIAction should consume events originating only within the same frame as the GUIAction itself
execute() - Method in class edu.ucsb.nceas.morpho.query.Query
Run the query against the local data store and metacat, depending on how the searchMetacat and searchLocal flags are set.
execute() - Method in class edu.ucsb.nceas.morpho.query.LocalQuery
Run the query against the local document store
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.Morpho.CreateNewProfileCommand
 
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
execute paste command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
execute insert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
execute insert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.EditColumnMetaDataCommand
execute edit column meta data command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DeleteRowCommand
execute delete row command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
execute paste command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.ImportDataCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
execute paste command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.CreateNewDataPackageCommand
execute create data package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.SortDataTableCommand
execute sort data table command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DeleteColumnCommand
execute insert command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.framework.HelpCommand
execute help command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.framework.LoginCommand
execute command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.CloseCommand
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.BackCommand
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.EditCommand
execute this object's command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.ReviseSearchCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.NetworkToLocalCommand
execute open package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
execute open package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.SaveQueryCommand
execute savequery command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.RefreshCommand
execute refresh command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenPreviousVersionCommand
execute delete local package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.ExportCommand
execute delete local package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.LocalToNetworkCommand
execute open package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.SearchCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand
execute open delete dialog command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.CancelCommand
execute cancel command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.query.DeleteCommand
execute delete local package command
execute(ActionEvent) - Method in class edu.ucsb.nceas.morpho.util.SortTableCommand
execute sort table command
execute(ActionEvent) - Method in interface edu.ucsb.nceas.morpho.util.Command
execute this object's command
exitApplication() - Method in class edu.ucsb.nceas.morpho.Morpho
Exit the application, asking the user if they are sure
export(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
exports a package to a given path
export(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Exports the package.
export(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method exports an entire data package to a given location.
ExportCommand - class edu.ucsb.nceas.morpho.query.ExportCommand.
Class to handle export package (both regular and zip) command
ExportCommand(OpenDialogBox, String) - Constructor for class edu.ucsb.nceas.morpho.query.ExportCommand
Constructor of ExportCommand
exportToZip(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Exports a package to a zip file at the given path
exportToZip(String, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Exports the package into a zip file
exportToZip(String, String, String) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method exports an entire data package to a given location in a zip file.

F

FieldsToColData() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
FileSystemDataStore - class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore.
implements and the DataStoreInterface for accessing files on the local file system.
FileSystemDataStore(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
create a new FileSystemDataStore for a Morpho
FileUtils - class edu.ucsb.nceas.morpho.framework.FileUtils.
This class provides convenience methods for manipulating filesystem objects, such as copying from one file to another.
FileUtils() - Constructor for class edu.ucsb.nceas.morpho.framework.FileUtils
 
finished() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Called on the event dispatching thread (not on the worker thread) after the construct method has returned.
fireActionEvent(int, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Does callback to actionPerformed() method of each java.awt.event.ActionListener in the list of registered listeners.
fireEditingCanceledEvent(DocFrame, String) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
Fire off notifications to EditingCanceledListeners when the editing has been completed
fireEditingCompleteEvent(DocFrame, String) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
Fire off notifications to EditingCompleteListeners when the editing has been completed
firstRow - Variable in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
allow for header rows
FOCUS_BORDER_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
FOCUSED_BORDER_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
FRAME_AND_TASKBAR_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 

G

get() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Return the value created by the construct method.
get(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Gets the value(s) corresponding to a key string (i.e.
get(String, int) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Gets the value(s) corresponding to a key string (i.e.
getAbstractState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
returns state of Abstract checkbox
getAcceleratorKey() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Method to get accelerator key
getAccessFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
get the id of the access doc for the indicated id
getAccessFileIdForDataPackage() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getAccessId() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the access file's id from the package
getAllIdentifiers() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns a vector containing a distinct set of all of the file ids that make up this package
getAllState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
get state of 'All' check box
getAsStringBuffer(Reader, boolean) - Static method in class edu.ucsb.nceas.morpho.util.IOUtil
reads character data from the Reader provided, using a buffered read.
getAttribute(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get an attribute value by name
getAttributeDoc() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get the attribute documentation
getAttributeFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getAttributeFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getAttributes() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns a hashtable of vectors with the basic values in it.
getAttributes() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the attributes as a string
getBottom() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getCardinality() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getChangedState() - Method in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Get the value of the changedState for this event.
getChildren() - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Retrieve an Enumeration of query terms for this QueryGroup
getChildren() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the an enumeration of the children of this node
getClipboardObject() - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
getCollection() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
return a vector of Triple objects that represent this collection.
getCollectionByObject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a vector of triples with the given object
getCollectionByRelationship(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a vector of triples with the given relationship
getCollectionBySubject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a vector of triples with the given subject
getColumnClass(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the Class for each column so that they can be rendered correctly.
getColumnCount() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getColumnCount() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the number of columns in this result set
getColumnData() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getColumnDefinition() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getColumnLabel() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getColumnLabels() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get the column_lables
getColumnMetadataEditPanel() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get column meta data edit panel
getColumnName() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getColumnName(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getColumnName(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Determine the name of a column by its index
getCommand() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the edu.ucsb.nceas.morpho.util.Command for this item.
getCommand() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the command in this action object
getCommandObject(int) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
return an instance of a Command object, identified by one of the integer constants defined above
getCommandObject(int) - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
return an instance of a Command object, identified by one of the integer constants defined above
getCommandObject(int) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
return an instance of a Command object, identified by one of the integer constants defined above
getCommandObject(int) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
return an instance of a Command object, identified by one of the integer constants defined above
getConfigDirectory() - Static method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Determine the home directory in which configuration files should be located
getConfigFileTypeAttributes(Morpho, String) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
gets the file types from the config file and hashes them by a specified attribute
getConfiguration() - Static method in class edu.ucsb.nceas.morpho.Morpho
Get the configuration object associated with the framework.
getContentComponent() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Get the contentComponent of MorphoFrame
getContentType() - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Get the content header after encoding.
getCookie() - Static method in class edu.ucsb.nceas.morpho.framework.HttpMessage
return the cookie that this message object contains
getCurrentActiveWindow() - Method in class edu.ucsb.nceas.morpho.framework.UIController
get currently active window
getCurrentDataViewer() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method to get current data viewer
getCurrentProfileName() - Static method in class edu.ucsb.nceas.morpho.Morpho
Get the profile name for the currently logged in user.
getCurrentTransformerProperties() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Returns all name/value pairs describing the properties to be set for the transformer, in the form of a Properties object *NOTE* this method returns a clone of the Properties, not a reference to the Properties object itself!
getData(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getData(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getDataFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getDataFileID(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the ID (i.e.
getDataFileName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the original text name of the datafile, which for EML beta6 is contained in the triples relationship string, inside parentheses)
getDataPackage() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method to get data package
getDataPackageGui() - Method in class edu.ucsb.nceas.morpho.datapackage.EntityGUI
 
getDataTable() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get data table
getDataType() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getDataViewContainerPanelFromMorphoFrame(MorphoFrame) - Static method in class edu.ucsb.nceas.morpho.datapackage.AddDocumentationCommand
Gave a morphoFrame, get DataViewContainerPanel from it.
getDefaultContentAreaSize() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Returns the default size that the content area should be on this screen.
getDefaultIcon() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the default Icon for this action object
getDescriptions() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
getDialog() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the dialog from ResultPanle
getDisplayComponent(String, XMLFactoryInterface, ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method used to obtain a visual component (a descendent of java.awt.Component, which will display the XML resource identified by the identifier parameter.
getDisplayComponent(String, XMLFactoryInterface, ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method used to obtain a visual component (a descendent of java.awt.Component, which will display the XML resource identified by the identifier parameter.
getDisplayComponent(XMLFactoryInterface, ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method used to obtain a visual component (a descendent of java.awt.Component, which will subsequently display the XML resources identified by unique string IDs.
getDisplayComponent(XMLFactoryInterface, ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method used to obtain a visual component (a descendent of java.awt.Component, which will subsequently display the XML resources identified by unique string IDs.
getDisplayName() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the text display name for this item.
getDoc() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
Returns the document as an XMLElement object.
getDoc(File, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
parses file with the dom parser and returns a dom Document
getDoc(File, String) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
parses file with the dom parser and returns a dom Document
getDocID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the doc id of this node
getDocIdFromMorphoFrame(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Method to get docid from a given morpho frame
getDocIdFromMorphoFrame(MorphoFrame) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Method to get docid from a given morpho frame
getDoctype() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
Returns the public identifier of the doctype that this config file represents
getDtd() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
Returns the path to the dtd that this config file represents
getEditor() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getEditor(Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
gets the editor context and returns it
getElementInfo(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getElementInfo(DefaultMutableTreeNode, Hashtable, Hashtable) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getElements(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
given a DefaultMutableTreeNode, build a Hashtable of all elements that have text i.e.
getElements(DefaultMutableTreeNode) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
given a DefaultMutableTreeNode, build a Hashtable of all elements that have text i.e.
getEntityFileId() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get EntityFileid
getEntityInfo() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getEntityitems() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
Method to get entityitems.
getEntityResolver() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Gets the EntityResolver from the XML parser that will be used by this transformer.
getEnumButton() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getFactory() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Get the current XML factory, used to resolve IDs into XML documents
getFieldDelimiter() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get field_delimiter string
getFieldDelimiter() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to get field delimiter
getFilterDocList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the filter doc types as defined in the <filterdoctype> tag in the pathquery dtd.
getFirstRow() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to get the value of first Row
getFrameObjects() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
getFrames() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
getFramework() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method to get frame work
getFramework() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Get a reference to the Morpho application framework
getGlobalRoot() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
 
getGUIActionCloneUsedByMorphoFrame(GUIAction, MorphoFrame) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
This method can be used if you have the original GUIAction instance and want to get the existing clone of it that was put into a particular MorphoFrame by UIController.
getHashtable(String, String, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Assume that there is some parent node which has a subset of child nodes that are repeated e.g.
getHeader() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
protected method: get a reference to the embedded HeaderPanel object
getHeaderLinesVector() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to get headerLinesVector
getHelp() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getHistory() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
 
getHTMLPanel() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
protected method: get a reference to the embedded HTMLPanel object
getIcon() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getIconName() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getID() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the id of the head of this package (i.e.
getIdentifier() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Get the String identifier associated with the currently-displayed metadata
getIdentifier() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Get the String identifier associated with the currently-displayed metadata
getIdentifier() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return the identifier of this Query
getIdString() - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Gets the IdString attribute of the DocFrame object
getIdWithoutVersion(String) - Static method in class edu.ucsb.nceas.morpho.query.ResultPanel
Given a docid, return the string withoutversion
getIndexOfSortedColumn() - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Get the index of Sorted column
getInMemoryNum() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
getInstance() - Static method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Create a new instance and set its default size
getInstance() - Static method in class edu.ucsb.nceas.morpho.framework.UIController
Get the single instance of the UIController, creating it if needed.
getInstance() - Static method in class edu.ucsb.nceas.morpho.plugins.ServiceController
Get the single instance of the ServiceController, creating it if needed.
getInstance() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayFactoryInterface
Return a new instance of an object that implements the MetaDisplayInterface.
getInstance() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Required by MetaDisplayFactoryInterface: Returns a new instance of an object that implements the MetaDisplayInterface
getInstance() - Static method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
Get the single instance of the StateChangeMonitor, creating it if needed.
getInstance() - Static method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Used to get a shared instance of the XMLTransformer
getItem() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getJavaVersionFlag() - Method in class edu.ucsb.nceas.morpho.Morpho
returns true if the JVM version is 1.3 or greater
getJTable() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the Jable
getKeywordsState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
returns state of Keywords check box
getLast() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
Gets the PathElement that is currently at the end of the path
getLeft() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getLength() - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Get the length in bytes of this form after encoding.
getLocalLocation() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the local location
getLocation() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the location of the data package.
getLocationString() - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Gets the LocationString attribute of the DocFrame object
getLog() - Static method in class edu.ucsb.nceas.morpho.util.Log
Get the single instance of the Log
getLogStack() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getMainFrame() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
getMaximum() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getMenuItemPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the menu item position for this action
getMenuName() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the menu name for this action
getMenuPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the menu position for this action
getMessage() - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Gets the text message currently being displayed
getMetacatInputStream(Properties) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatInputStream(Properties, boolean) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatLocation() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the metacatLoc
getMetacatString(Properties) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetacatString(Properties, boolean) - Method in class edu.ucsb.nceas.morpho.Morpho
Send a request to Metacat
getMetaDisplay(int) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayFactoryInterface
Return a reference to an existing object that implements the MetaDisplayInterface.
getMetaDisplay(int) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Required by MetaDisplayFactoryInterface: Returns a reference to an existing object that implements the MetaDisplayInterface.
getMetaDisplayUI() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
 
getMinimum() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getMissingValue() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getMorpho() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get morpho
getMorpho() - Static method in class edu.ucsb.nceas.morpho.framework.UIController
get Morpho
getMorphoFrameAncestor(Component) - Static method in class edu.ucsb.nceas.morpho.util.GUIAction
 
getMorphoFrameContainingGUIAction(GUIAction) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
return the MorphoFrame that contains the GUIAction clone provided
getName() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getNetworkStatus() - Method in class edu.ucsb.nceas.morpho.Morpho
Determine whether a network connection is available before trying to open a socket, since this would cause an error
getNewHistoryItemInstance(String, Properties) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
public accessro for protected class; primarily for testing
getNextId() - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
returns the next local id from the config file returns null if configXML was unable to increment the id number
getNextId(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
returns the next local id from the config file returns null if configXML was unable to increment the id number
getNextId(Morpho) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
returns the next local id from the config file returns null if configXML was unable to increment the id number
getNode(String) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getNode(String) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getNodeID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the id of this node
getNodeIndex() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get nodeIndex of the node
getNodeList() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
 
getNodeType() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the type of this node
getNumberOfPrevVersions(String) - Static method in class edu.ucsb.nceas.morpho.query.ResultPanel
Given a docid, caculate the number of its previous versions
getNumButton() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getObject() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
get the object of this triple
getObjectLength(long) - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
getOperator() - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Retrieve the operator for this QueryGroup
getOrderOfSortedColumn() - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Get the sorted table oder statuts
getOriginalAction() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the original action from which a clone was made.
getOwnerList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the owner fields as defined in the <owner> tag in the pathquery dtd.
getPackageName() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the package name (docid without version).
getParentFrame() - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBox
Method to get the parent morphoFrame of dialog
getParentID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the parent id of this node
getParts(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
Returns a vector with all components of the accession number.
getPassword() - Method in class edu.ucsb.nceas.morpho.Morpho
get password associated with this framework
getPassword() - Method in interface edu.ucsb.nceas.morpho.framework.LoginClientInterface
gets the user-entered password from the client
getPassword() - Method in class edu.ucsb.nceas.morpho.framework.ConnectionFrame
gets the user-entered password from the client
getPathContent(File, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
gets the content of a tag in a given xml file with the given path
getPathContent(File, Vector, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Takes in a vector of paths and searches for each of the paths until a node is found that matches the paths.
getPathContent(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
gets the content of a tag in a given xml file with the given path
getPathExpression() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
get the path expression parameter
getPathToRoot() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the edu.ucsb.nceas.morpho.plugins.metadisplay.Path from this item to the root item.
getPCValue() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getPersistentTableModel() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get persistent talbe model
getPersistentVector() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getPhysicalFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getPhysicalFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
getPrecision() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getPrevious() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
Gets the String identifier that was most recently added to history, and actually removes it from history
getPreviousElement() - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
gets the previous PathElementInterface from the path
getPreviousVersions() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the version number.
getProfile() - Method in class edu.ucsb.nceas.morpho.Morpho
Get the profile ConfigXML for the currently logged in user.
getProfilesList() - Method in class edu.ucsb.nceas.morpho.Morpho
 
getPV() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
getQuery() - Method in class edu.ucsb.nceas.morpho.query.QueryDialog
Get the Query built using this dialog box
getQuery() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Get the query that was used to construct these results
getQuery() - Method in class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
Get query from the object
getQueryGroup() - Method in class edu.ucsb.nceas.morpho.query.Query
get the QueryGroup used to express query constraints
getQueryTitle() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return the title of this Query
getRelatedFiles() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns a hashtable of the related files taken from the triples.
getRelationship() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
get the relationship of this triple
getResultPanel() - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBox
Method to get the parent morphoFrame of dialog
getResultPanelFromMorphoFrame(MorphoFrame) - Static method in class edu.ucsb.nceas.morpho.query.RefreshCommand
Gave a morphoFrame, get resultpanel from it.
getResultSet() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the result set from ResultPanel
getResultsVector() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
get the resultsVector
getResultsVector() - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
get the resultsVector
getReturnDocList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the return document types as defined in the <returndoctype> tag in the pathquery dtd.
getReturnFieldList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the extended return fields as defined in the <returnfield> tag in the pathquery dtd.
getRight() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getRolloverSmallIcon() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the *rollover* small Icon to be displayed on toolbar buttons
getRolloverTextLabel() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the *rollover* text label to be displayed on toolbar buttons (mainly used for HTML text, where only the color or font face changes)
getRoot() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
Returns the public identifier of the doctype that this config file represents
getRootEditor() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
getRootNodeID() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the root node id of this node
getRowCount() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getRowCount() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the number of records in this result set
getRowCount() - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Return the number of records in this result set
getRowHeight() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Return the correct row height for table rows
getSearchLocal() - Method in class edu.ucsb.nceas.morpho.query.Query
determine if we should search locally
getSearchMetacat() - Method in class edu.ucsb.nceas.morpho.query.Query
determine if we should search metacat
getSearchMode() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
return the value of the combobox which contains the search mode (i.e.
getSearchMode() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
get the searchmode parameter
getSearchMode() - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
return the value of the combobox which contains the search mode (i.e.
getSelectedId() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the selectedId
getSeparatorPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the separator position for this action
getServiceProvider(Class) - Method in class edu.ucsb.nceas.morpho.plugins.ServiceController
This method is called by plugins to get a reference to an object that implements a particular interface
getSessionCookie() - Method in class edu.ucsb.nceas.morpho.Morpho
Gets the SessionCookie attribute of the Morpho object
getShowDataView() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get the show data view
getSiteList() - Method in class edu.ucsb.nceas.morpho.query.Query
Accessor method to return a vector of the site fields as defined in the <site> tag in the pathquery dtd.
getSmallIcon() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the small Icon to be displayed on menus
getSortDirection() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get sort direction
getSorted() - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Get the table if sorted or not
getSource() - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
getSource() - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
getSslStatus() - Method in class edu.ucsb.nceas.morpho.Morpho
Determines if the framework is using an ssl connection
getStatusBar() - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Get the StatusBar to update its status
getStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Get the stored state change event.
getStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Get the stored state change event.
getStoredStateChangeEvent() - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Get the stored state change event.
getStoredStateChangeEvent() - Method in interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent
Get the stored state change event.
getStringArrayAsString(String[]) - Static method in class edu.ucsb.nceas.morpho.util.IOUtil
Given an array of String objects, returns the array elements as a single string, formatted as a "list" for printing to command line or logging
getStringFromFile(File) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
returns the string representation of a file
getSubject() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
get the subject of this triple
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.query.ImageRenderer
return a JLable as compent
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.query.ToolTippedTextRenderer
Return self as rendering components
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.ucsb.nceas.morpho.util.SortableTableHeaderCellRenderer
Method to return table cell render
getTablePanel() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get table panel
getTagName() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Get the name of this node
getTarget() - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
getTaxonRank() - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
return the value of the combobox which contains the taxonomic rank (i.e.
getTaxonSynonyms(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Look up the synonyms of a taxon from ITIS, and return the list of names
gettextButton() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getTextDefinition() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getTextFlag() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to get text flag
getTextLabel() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the text for the display label
getTextPattern() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getTextSource() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getTitleState() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
returns state of Title checkbox
getToolbarPosition() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Get the position of this action on the toolbar.
getToolTipText() - Method in class edu.ucsb.nceas.morpho.util.GUIAction
gets the text for the tooltip
getToolTipText(MouseEvent) - Method in class edu.ucsb.nceas.morpho.query.ToolTippedSortableJTable
In order to only show tool tion of the cell which is elided, getToolTipText will be overwritten
getTop() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
getTransformerProperty(String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to get the transformer property value corresponding to the passed key
getTransformerProperty(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to get the transformer property value corresponding to the passed key
getTransformerProperty(String) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Gets the String value of the Property corresponding to the key passed in
getTransformerPropertyNames() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Gets an Enumeration containing the names (keys of all the properties to be set for the transformer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.ucsb.nceas.morpho.editor.XMLTreeCellRenderer
required method for a TreeCellRenderer uses icon in userobject for each nodeinstead of an icon which is based on whether node is leaf or branch.
getTriple() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple as a vector of strings
getTripleFileDom() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
returns the dom representation of the triple file.
getTriples() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
returns the TripleCollection of all of the triples in this document
getTriples() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
gets the triplesCollection created by this object
getTriplesFile() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
gets the file that contains the package information.
getUnit() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
getUserName() - Method in class edu.ucsb.nceas.morpho.Morpho
Get the username associated with this framework
getValue() - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Method to get cell value
getValue() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Get the value produced by the worker thread, or null if it hasn't been constructed yet.
getValue() - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
get the text that is to be seached for.
getValue() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
get the Value parameter
getValue() - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
get the text that is to be seached for.
getValue(String) - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
getValue(String) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Determine the value of a column by its row and column index
getValueAt(int, int) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Determine the value of a column by its row and column index
getValueAt(JTable, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
getValueAt(JTable, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
getValuesForPath(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
 
getXML() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
gets the xml produced from the wizard If xmlString is NOT null, then the value of xmlString is returned
getXMLString() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
get the xmlString
getXSLTStylesheetReader(String) - Method in interface edu.ucsb.nceas.morpho.plugins.XSLTResolverInterface
method to return a Reader object, which will provide access to a character-based XSLT stylesheet.
getXSLTStylesheetReader(String) - Method in class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin
Required by XSLTResolverInterface: method to return a Reader object, which will provide access to a character-based XSLT stylesheet.
GUIAction - class edu.ucsb.nceas.morpho.util.GUIAction.
Class GUIAction This class extends javax.swing.AbstractAction in order to provide basic "Action" functionality for the GUI.
GUIAction(String, Icon, Command) - Constructor for class edu.ucsb.nceas.morpho.util.GUIAction
Constructor

H

handleEvent(Event) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
handleStateChange(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method implements from StateChangeListener.
handleStateChange(StateChangeEvent) - Method in interface edu.ucsb.nceas.morpho.util.StateChangeListener
This method is called if there is a change in the state of the application.
handleStateChange(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Handle a state change.
hasDataFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
hasMutipleVersions() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Method to determine if the this pakcage has mutiple versions
HEADER_BOTTOMLINE_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
HeaderPanel - class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel.
Plugin that builds a display panel to display metadata.
HeaderPanel(MetaDisplay) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
constructor
HeadResultSet - class edu.ucsb.nceas.morpho.query.HeadResultSet.
A HeadResultSet encapsulates the list of results returned from either a local query or a Metacat query, but only presents the most recent revision of a document as part of the Table Model.
HeadResultSet(Query, String, InputStream, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.HeadResultSet
Construct a HeadResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
HeadResultSet(Query, String, Vector, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.HeadResultSet
Construct a HeadResultSet instance from a vector of vectors; for use with LocalQuery
HelpCommand - class edu.ucsb.nceas.morpho.framework.HelpCommand.
Class to handle help command
HelpCommand() - Constructor for class edu.ucsb.nceas.morpho.framework.HelpCommand
Constructor of HelpCommand
helpTrees - Static variable in class edu.ucsb.nceas.morpho.editor.DocFrame
a hashtable for saving trees with help and formatting info assume that the key is the name of the rootnode
History - class edu.ucsb.nceas.morpho.plugins.metadisplay.History.
A history implementation to wrap the underlying data structure
HISTORY_BACK_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
descriptive constant used in ActionEvents generated by the display Signifies that user has requested the previous document from History
History() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.History
constructor
History(HistoryItem) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.History
constructor
HREF_PATH_EXTENSION_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold path extension for href links in triples.
ht - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
ht - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
HTMLBrowser - class edu.ucsb.nceas.morpho.framework.HTMLBrowser.
This class is a 'quick and dirty' HTML browser written in Java.
HTMLBrowser() - Constructor for class edu.ucsb.nceas.morpho.framework.HTMLBrowser
 
HTMLBrowser(String) - Constructor for class edu.ucsb.nceas.morpho.framework.HTMLBrowser
Creates a new instance of JFrame1 with the given title.
HTMLPanel - class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel.
Plugin that builds a display panel to display metadata.
HTMLPanel(MetaDisplayInterface) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
constructor
HTMLPanel(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
constructor
htnodes - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
htnodes - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
HttpMessage - class edu.ucsb.nceas.morpho.framework.HttpMessage.
 
HttpMessage(URL) - Constructor for class edu.ucsb.nceas.morpho.framework.HttpMessage
 
HYPERLINK_FONT_HTML_CLOSETAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html closing tags for font on hyperlink urls
HYPERLINK_FONT_HTML_OPENTAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html opening tags for font on hyperlink urls
HYPERLINK_FONT_OVER_HTML_CLOSETAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html closing tags for font on hyperlink urls during mouseover
HYPERLINK_FONT_OVER_HTML_OPENTAGS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html opening tags for font on hyperlink urls during mouseover
HyperlinkButton - class edu.ucsb.nceas.morpho.util.HyperlinkButton.
This class extends JButton to provide something that looks more like an HTML-hyperlink
HyperlinkButton(GUIAction) - Constructor for class edu.ucsb.nceas.morpho.util.HyperlinkButton
Constructor
hyperlinkUpdate(HyperlinkEvent) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
 

I

ignorableWhitespace(char[], int, int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
ImageRenderer - class edu.ucsb.nceas.morpho.query.ImageRenderer.
Renders the contents of a table image cell as a JLable with icon
ImageRenderer() - Constructor for class edu.ucsb.nceas.morpho.query.ImageRenderer
Create the renderer with appropriate formatting options set
importCanceled() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
 
importCanceled() - Method in interface edu.ucsb.nceas.morpho.framework.TextImportListener
this method handles canceled editing
importComplete() - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
 
importComplete() - Method in interface edu.ucsb.nceas.morpho.framework.TextImportListener
This method is called when editing is complete
ImportDataCommand - class edu.ucsb.nceas.morpho.datapackage.ImportDataCommand.
Class to handle import data file command
ImportDataCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.ImportDataCommand
Constructor of Import data command
incChildNum() - Method in class edu.ucsb.nceas.morpho.query.BasicNode
increase childNum when new child for the node is created
incRev(String) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
returns an id with an incremented id.
incRev(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
parses id and adds a revision number to it.
incRevInTriples(File, String, String) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
 
incRevInTriples(File, Vector, Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.AccessionNumber
searches an xml file for triples.
indexOfRow - Variable in class edu.ucsb.nceas.morpho.query.CellComparator
 
INIT_SCR_BACKGROUND - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LINKBUTTON_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
size of the hyperlink buttons on the left side of the initial screen
INIT_SCR_LOGGED_IN_MESSAGE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGGED_IN_STATUS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGGEDOUT_STATUS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGIN_BUTTON_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGIN_HEADER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_LOGIN_MESSAGE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCR_PANEL_LITE_FONT_CLOSE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
closing html tags for light-value text in panels to the left of the initial screen
INIT_SCR_PANEL_LITE_FONT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
opening html tags for light-value text in panels to the left of the initial screen
INIT_SCR_PANEL_TITLE_HILITE_FONT_CLOSE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
opening html tags for highlighted text in title bars on panel to the left of the initial screen
INIT_SCR_PANEL_TITLE_HILITE_FONT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
opening html tags for highlighted text in title bars on panel to the left of the initial screen
INIT_SCRN_DATA_PANEL_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCRN_LEFT_PANELS_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
background color of the 3 panels on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_LABELDIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
size of the "Change Profile" and "Password" labels on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
# pixels padding around & between the 3 panels on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_PICKLISTDIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
size of the "Change Profile" and "Password" picklists (JComboBoxes) on the left side of the initial screen
INIT_SCRN_LEFT_PANELS_TITLE_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
background color of the title bars on the 3 panels to the left of the initial screen
INIT_SCRN_LEFT_PANELS_TITLE_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Dims in pixels for each of 3 panels on the left side of initial screen
INIT_SCRN_LEFT_PANELS_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Width in pixels for each of 3 panels on the left side of initial screen
INIT_SCRN_LOGIN_PANEL_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
INIT_SCRN_MAIN_BG_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
background color of the main part of the initial screen
INIT_SCRN_PANELS_DATA_TITLE_TEXT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html tags and text for title bar on the "Data" panel to the left of the initial screen
INIT_SCRN_PANELS_LOGIN_TITLE_TEXT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html tags and text for title bar on the "Login" panel to the left of the initial screen
INIT_SCRN_PANELS_PROFILE_TITLE_TEXT_OPEN - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
html tags and text for title bar on the "Profile" panel to the left of the initial screen
INIT_SCRN_PANELS_TITLE_CLOSE - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
common to the above 3: closing html tags and text for title bar on the panel to the left of the initial screen
INIT_SCRN_PROFILE_PANEL_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
init() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Initialization code which collects information about the data from various metadata modules associated with the entity to be displayed
init() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
init() - Method in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
init() - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
init() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
init() - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to initialize
init(File) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
init(File, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
init(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
initDoc(Morpho, String, boolean) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Description of the Method
initEmpty(String[]) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
INITIALFRAMENAME - Static variable in class edu.ucsb.nceas.morpho.Morpho
Constant of initial morpho frame name
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
The plugin must store a reference to the Morpho application in order to be able to call the services available through the framework.
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
The plugin must store a reference to Morpho in order to be able to call the services available through the framework.
initialize(Morpho) - Static method in class edu.ucsb.nceas.morpho.framework.UIController
Initialize the single instance of the UIController, creating it if needed.
initialize(Morpho) - Method in interface edu.ucsb.nceas.morpho.plugins.PluginInterface
This method is called after the Plugin has been created in order to allow the plugin a chance to initialize variables, create menus and toolbars, and store a reference to the framework.
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
Required by PluginInterface; called automatically at runtime
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin
Required by PluginInterface; called automatically at runtime
initialize(Morpho) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
The plugin must store a reference to the Morpho in order to be able to call the services available through the framework.
InitialScreen - class edu.ucsb.nceas.morpho.framework.InitialScreen.
A panel that contains the initial welcome screen.
InitialScreen(Morpho, MorphoFrame) - Constructor for class edu.ucsb.nceas.morpho.framework.InitialScreen
 
insert(String, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Inserts another node before the first element with the name contained in 'key', otherwise appends it to the end of the config file (last element in root node)
insertColumn(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
add a column after the last current column new column is filled with spaces
InsertColumnCommand - class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand.
Class to handle insert a cloumn command
InsertColumnCommand(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.InsertColumnCommand
Constructor of Import data command
insertElementAt(Serializable, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
insertIdInFile(File, String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
inserts a documents id into a specified path in the document.
insertRow(int, Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
insert a row at indicated position vec is assumed to be a Vector of strings
InsertRowCommand - class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand.
Class to handle insert a row command
InsertRowCommand(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.InsertRowCommand
Constructor of Import data command
insertString(int, String, AttributeSet) - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField.NoDelimiterDocument
 
interrupt() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
A new method that interrupts the worker thread.
IOUtil - class edu.ucsb.nceas.morpho.util.IOUtil.
General static utilities for IO operations
isCaseSensitive() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
determine if the QueryTerm is case sensitive
isCellEditable(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
isChoice() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
isConnected() - Static method in class edu.ucsb.nceas.morpho.Morpho
Determines if the framework has a valid login
isDataFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
isDataFileText(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
isDataPackageInLocal(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Method to determine a data package which in a morpho frame if is in local
isDataPackageInLocal(MorphoFrame) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Method to determine a data package which in a morpho frame if is in local
isDataPackageInNetwork(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Method to determine a data package which in a morpho frame if is in network
isDataPackageInNetwork(MorphoFrame) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Method to determine a data package which in a morpho frame if is in network
isFocusTraversable() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
 
ISLOCALINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of islocal in resultsVector
ISMETACATINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of ismetacat in resultsVector
isSearchStarted() - Method in class edu.ucsb.nceas.morpho.query.QueryDialog
determine whether the query should be executed
isSelected() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
itemStateChanged(ItemEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
not used in this implementation

K

KEYWORDSINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of keywords in resultsVector
keywordsRefLabel - Variable in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 

L

length() - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
LiveMapPanel - class edu.ucsb.nceas.morpho.query.LiveMapPanel.
A map selection applet.
LiveMapPanel() - Constructor for class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
loadNewPage(Object) - Method in class edu.ucsb.nceas.morpho.framework.HTMLBrowser
 
loadSavedQueries() - Method in class edu.ucsb.nceas.morpho.query.SaveQueryCommand
Load the saved queries into the Search menu so that the user can launch any queries they saved from previosu sessions.
loadSavedQueries(Morpho) - Static method in class edu.ucsb.nceas.morpho.query.SaveQueryCommand
Load the saved queries into the Search menu so that the user can launch any queries they saved from previosu sessions.
LOCAL - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
used to signify that this package is located locally
LocalDocTypesPanel - class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel.
 
LocalDocTypesPanel() - Constructor for class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
Default constructor.
LocalDocTypesPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
localIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing local storage.
LocalQuery - class edu.ucsb.nceas.morpho.query.LocalQuery.
LocalQuery is a class designed to execute a query defined in an XML document that follows the PathQuery DTD.
LocalQuery(Query, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.LocalQuery
Basic Constuctor for the class
LocalToNetworkCommand - class edu.ucsb.nceas.morpho.query.LocalToNetworkCommand.
Class to handle upload a package to network command
LocalToNetworkCommand(OpenDialogBox, JDialog, MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.LocalToNetworkCommand
Constructor of LocalToNetworkCommand in dialog
LOCALTOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
LockedPanel - class edu.ucsb.nceas.morpho.editor.LockedPanel.
Locked panel is an example of a very simple plug-in panel to be used by the XML editor.
LockedPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.LockedPanel
 
Log - class edu.ucsb.nceas.morpho.util.Log.
The Log is a utility class for logging messages to stdout, stderr, a file, or a dialog box.
logIn() - Method in class edu.ucsb.nceas.morpho.Morpho
Log into metacat.
LoginClientInterface - interface edu.ucsb.nceas.morpho.framework.LoginClientInterface.
Interface used by LoginCommand to do callbacks to login client that called the LoginCommand.
LoginCommand - class edu.ucsb.nceas.morpho.framework.LoginCommand.
Class to handle login
LoginCommand(Morpho, LoginClientInterface) - Constructor for class edu.ucsb.nceas.morpho.framework.LoginCommand
Constructor
LOGOUT_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
LOGOUT_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
LOGOUT_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
logOut() - Method in class edu.ucsb.nceas.morpho.Morpho
Log out of metacat
logOutExit() - Method in class edu.ucsb.nceas.morpho.Morpho
Log out of metacat when exiting.
lookupResultsVectorIndex(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Lookup an array to find resultsVector index for header index header index resultVector index 0 PACKAGEICONEX(0) 1 TITLEINDEX(1) 2 DOCIDINDEX(6) 3 SURNAMEINDEX(2) 4 KEYWORKDINDEX(3) 5 UPDATEDATEINDEX(5) 6 ISLOCALINDEX(9) 7 ISMETACATINDEX(10)

M

main(String[]) - Static method in class edu.ucsb.nceas.morpho.Morpho
The entry point for this application.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
command line test method.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
Test method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
Test method that allows command line execution.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
Test method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Test method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.editor.DocFrame
Description of the Method
main(String[]) - Static method in class edu.ucsb.nceas.morpho.framework.HTMLBrowser
The entry point for this application.
main(String[]) - Static method in class edu.ucsb.nceas.morpho.framework.SplashFrame
Test the frame
main(String[]) - Static method in class edu.ucsb.nceas.morpho.framework.TextImportResultsFrame
 
main(String[]) - Static method in class edu.ucsb.nceas.morpho.query.Query
Main routine for testing
main(String[]) - Static method in class edu.ucsb.nceas.morpho.query.LocalQuery
Main routine for testing
main(String[]) - Static method in class edu.ucsb.nceas.morpho.util.DBValidate
main method for testing
MAX_WINDOW_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
MAX_WINDOW_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
MENU_PATH - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
merge(ResultSet) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Merge a ResultSet onto this one using the docid as the join column
merge(ResultSet) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Merge a ResultSet onto this one using the docid as the join column
METACAT - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
used to signify that this package is located on a metacat server
MetacatDataStore - class edu.ucsb.nceas.morpho.datastore.MetacatDataStore.
implements and the DataStoreInterface for accessing files on the Metacat
MetacatDataStore(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Constructor to create this object in conjunction with a ceartain morpho.
metacatIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing metacat storage.
METACATTOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
MetacatUploadException - exception edu.ucsb.nceas.morpho.datastore.MetacatUploadException.
This exception is thrown when an error occurs during communication with the metacat server.
MetacatUploadException(String) - Constructor for class edu.ucsb.nceas.morpho.datastore.MetacatUploadException
 
MetaDisplay - class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay.
Top-level controller/Mediator class for an instance of a metadata display panel.
MetaDisplay() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
constructor
MetaDisplayFactoryInterface - interface edu.ucsb.nceas.morpho.plugins.MetaDisplayFactoryInterface.
This interface provides methods for initializing, displaying, updating and registering as a listener for a Component that styles XML and displays the results
MetaDisplayInterface - interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface.
This interface provides methods for initializing, displaying, updating and registering as a listener for a Component that styles XML and displays the results
MetaDisplayPlugin - class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin.
Plugin that builds a display panel to display metadata.
MetaDisplayPlugin() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayPlugin
 
MetaDisplayUI - class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI.
Display component used by the MetaDisplay class to display: an embedded header panel containing navigation controls, and an embedded HTML display showing the results of styling the XML metadata document usig XSLT.
MetaDisplayUI(MetaDisplay) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
constructor
METAVIEW_BUTTON_INSETS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
insets for nuttons in metaviewer - order is (TOP, LEFT, BOTTOM, RIGHT)
METAVIEWER_BEGIN_EDIT - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that user has issued a command to edit the metadata in the MetaData Viewer.
METAVIEWER_HIDE_BUTTON_PRESSED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that the "Hide" button has been pressed in the MetaData Viewer
METAVIEWER_HISTORY_BACK - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that user has requested the previous document from History in the MetaData Viewer.
METAVIEWER_NAVIGATION - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a navigation event has been triggered in the MetaData Viewer.
Morpho - class edu.ucsb.nceas.morpho.Morpho.
Morpho is the main entry point for the Morpho application.
Morpho.CreateNewProfileCommand - class edu.ucsb.nceas.morpho.Morpho.CreateNewProfileCommand.
 
Morpho.CreateNewProfileCommand() - Constructor for class edu.ucsb.nceas.morpho.Morpho.CreateNewProfileCommand
 
Morpho(ConfigXML) - Constructor for class edu.ucsb.nceas.morpho.Morpho
Creates a new instance of Morpho
MorphoFrame - class edu.ucsb.nceas.morpho.framework.MorphoFrame.
The MorphoFrame is a Window in the Morpho application containing the standard menus and toolbars.
mouseClicked(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseClicked(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Mouse click event handler
mouseEntered(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseEntered(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mouseExited(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseExited(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mousePressed(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mousePressed(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mouseReleased(MouseEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
mouseReleased(MouseEvent) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
 
mouseUp(Event, int, int) - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
MultipartForm - class edu.ucsb.nceas.morpho.framework.MultipartForm.
This class represents name/value pairs and files in a byte array using the multipart/form-data encoding.
MultipartForm(NVPair[], NVPair[]) - Constructor for class edu.ucsb.nceas.morpho.framework.MultipartForm
Create a new form with form data and files using the multipart/form-data encoding.
MultipartForm(NVPair[], NVPair[], FilenameMangler) - Constructor for class edu.ucsb.nceas.morpho.framework.MultipartForm
Create a new form with form data and files using the multipart/form-data encoding and use the given FilenameMangler to alter filenames before encoding.

N

NAVIGATION_EVENT - Static variable in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * N O T E: THESE SHOULD BE SUPERSEDED BY THE STATE CHANGE EVENT CONSTANTS IN StateChangeEvent.java, AND THE WHOLE LISTENER SETUP SHOULD BE CHANGED TO USEW THE StateChangeMonitor...
NetworkToLocalCommand - class edu.ucsb.nceas.morpho.query.NetworkToLocalCommand.
Class to handle download a package from network command
NetworkToLocalCommand(OpenDialogBox, JDialog, MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.NetworkToLocalCommand
Constructor of NetworkToLocalCommand in dialog
NEW_DATAPACKAGE_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
Denotes an instance of the CreateNewDataPackageCommand object
NEW_DATAPACKAGE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_DATAPACKAGE_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_DATAPACKAGE_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_PROFILE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_PROFILE_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NEW_PROFILE_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NewDataFile - class edu.ucsb.nceas.morpho.datapackage.NewDataFile.
 
NewDataFile() - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NewDataFile(Frame) - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NewDataFile(Frame, DataPackage, Morpho, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
NewDataFile(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.NewDataFile
 
newDataFile(String, File) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
method to create a new data file on metacat.
newDataFile(String, InputStream) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
newFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
returns a File object in the local repository.
newFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Create and save a new file to metacat using the "insert" action.
newFile(String, Reader, DataPackage) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
create a new file with an id of name in the datastore and return a File object that represents it.
newFile(String, Reader, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
newFile(String, Reader, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
returns a File object in the local repository.
newFile(String, Reader, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Create and save a new file to metacat using the "insert" action.
newFile(String, Reader, DataPackage, boolean) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
 
node - Variable in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
node - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
node - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
NodeInfo - class edu.ucsb.nceas.morpho.editor.NodeInfo.
NodeInfo is a class used as a UserObject for a specialized JTree model.
NodeInfo(String) - Constructor for class edu.ucsb.nceas.morpho.editor.NodeInfo
creates a new NodeInfo object with the indicated name.
nodeMap - Variable in class edu.ucsb.nceas.morpho.editor.DFHPanel
 
nodeMap - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
NONEDITABLE_BACKGROUND_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
NONORDERED - Static variable in class edu.ucsb.nceas.morpho.util.SortableJTable
 
normalize(String) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Normalizes the given string.
normalize(String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Normalizes the given string.
notifyStateChange(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
Notify the monitor of an application state change so that it in turn can notify all of the registered listeners of that state change.
NOTSHOWIMPORTDATA - Static variable in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
NOTSHOWMETADATA - Static variable in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
NullArgumentException - exception edu.ucsb.nceas.morpho.exception.NullArgumentException.
This exception is thrown by a method which cannot deal gracefully with receiving a null argument - i.e.
NullArgumentException(String) - Constructor for class edu.ucsb.nceas.morpho.exception.NullArgumentException
 
numChoice - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 

O

ObjectFile - class edu.ucsb.nceas.morpho.datapackage.ObjectFile.
 
ObjectFile(String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
OPEN_DATAPACKAGE_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
Denotes an instance of the OpenDataPackageCommand object
OPEN_DATAPACKAGE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
OPEN_DATAPACKAGE_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
OPEN_DATAPACKAGE_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
openAsInputStream(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Open a sub-element of this datapackage (for example, a Module, or a sub-tree), given its String identifier.
openAsReader(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
 
openAsReader(String) - Method in interface edu.ucsb.nceas.morpho.plugins.XMLFactoryInterface
method to return a Reader object, which will provide access to a character-based resource.
openDataPackage(String, String, Vector, ButterflyFlapCoordinator) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
openDataPackage(String, String, Vector, ButterflyFlapCoordinator) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to open a data package that resides either locally (location=local) or on a Metacat server (location=metacat).
OpenDeleteDialogCommand - class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand.
Class to handle Open a dialog box command
OpenDeleteDialogCommand() - Constructor for class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand
Constructor of OpenDeleteDialogCommand
OpenDeleteDialogCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenDeleteDialogCommand
Constructor of OpenDeleteDialogCommand
OpenDialogBox - class edu.ucsb.nceas.morpho.query.OpenDialogBox.
A dialog box for user to open a datapakcage
OpenDialogBox(MorphoFrame, Morpho, Query) - Constructor for class edu.ucsb.nceas.morpho.query.OpenDialogBox
Construct a new instance of the query dialog
OpenDialogBoxCommand - class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand.
Class to handle Open a dialog box command
OpenDialogBoxCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.OpenDialogBoxCommand
Constructor of SearchCommand
openEditor(Node, EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.plugins.DOMEditorInterface
This method is called to open a XML editor to edit the DOM tree or subtree rooted at the Node provided.
openEditor(String) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor that resides either
openEditor(String, EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xmltext and an editingCompletedListener to be notified when the editing is completed
openEditor(String, String, String, EditingCompleteListener, boolean) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, EditingCompleteListener, boolean) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xmltext and an editingCompletedListener to be notified when the editing is completed.
openEditor(String, String, String, String, String, EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
openEditor(String, String, String, String, String, EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.framework.EditorInterface
This method is called to open a XML editor with the indicated xmltext and an editingCompletedListener to be notified when the editing is completed, the nodename and nodevalue parameters indicated node to be selected when documement is opened
openFile(String) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
open a file from a datastore with the id of name and return a File object that represents it.
openFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
openFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
opens a file with the given name.
openFile(String) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Opens a file from Metacat and returns a File object that represents the metacat file.
openFile(String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
opens a file on metacat or local.
openFile(String, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
figures out a files location if it is not known and opens it.
OpenPackageCommand - class edu.ucsb.nceas.morpho.query.OpenPackageCommand.
Class to handle open package command
OpenPackageCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Constructor of SearcCommand
OpenPreviousDialog - class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog.
 
OpenPreviousDialog() - Constructor for class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
OpenPreviousDialog(Frame) - Constructor for class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
OpenPreviousDialog(String, int, Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.datapackage.OpenPreviousDialog
 
OpenPreviousVersionCommand - class edu.ucsb.nceas.morpho.query.OpenPreviousVersionCommand.
Class to handle open a previous version package command
OpenPreviousVersionCommand(OpenDialogBox, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.OpenPreviousVersionCommand
Constructor of OpenPreviousVersionCommand
openResultRecord(int) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Open a given row index of the result set using a delegated handler class
openResultRecord(int) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Open a given row index of the result set using a delegated handler class
openResultRecord(Vector) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Open a given row of the result set using a delegated handler class
OpenSynchronizeDialogCommand - class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand.
Class to handle Open a synchronize (upload or download) dialog box command
OpenSynchronizeDialogCommand() - Constructor for class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand
Constructor of open synchronize dialog command
OpenSynchronizeDialogCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.OpenSynchronizeDialogCommand
Constructor of OpenSynchronizeDialogCommand
output() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 

P

PACKAGE_ID_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold default css stylesheet name
PACKAGE_INDEX_NAME_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold default css stylesheet name
packageDataIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing pakcage and data file
PACKAGEDATATOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
packageIcon - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
The icon for representing package
PACKAGEICONINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of package icon in resultsVector
PACKAGETOOLTIP - Static variable in class edu.ucsb.nceas.morpho.query.ImageRenderer
 
PackageUtil - class edu.ucsb.nceas.morpho.datapackage.PackageUtil.
This class contains static utility methods that are used throughtout the other *.morpho.datapackage.* classes.
PackageUtil() - Constructor for class edu.ucsb.nceas.morpho.datapackage.PackageUtil
 
PackageWizard - class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard.
This class builds a custom frame based on a configuration file.
PackageWizard() - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
constructor which initializes the window based on the paramater values in the wizard tag of the xml configuration document.
PackageWizard(Container, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
constructor which creates a package wizard frame in the given contentPane using the given framefile (xml configuration file).
PackageWizardParser - class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser.
A Class implementing callback bethods for the SAX parser to call when processing the XML messages from the Package Wizard
PackageWizardParser(Reader) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
 
PackageWizardShell - class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell.
This is the shell of the package wizard.
PackageWizardShell() - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
 
PackageWizardShell(int, AddMetadataWizard) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
 
PackageWizardShell(Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
 
PackageWizardShell(Morpho, int, AddMetadataWizard) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShell
 
PackageWizardShellParser - class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser.
A Class implementing callback bethods for the SAX parser to call when processing the XML messages from the Package Wizard
PackageWizardShellParser(Reader) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
 
paintComponent(Graphics) - Method in class edu.ucsb.nceas.morpho.framework.InitialScreen
overrides JPanel's paintComponent() method to paint graphic behind 3 panels on left of initial screen.
parseDTD() - Method in class edu.ucsb.nceas.morpho.editor.DTDTree
parses a dtd file and creates a tree of document instance
parseFile() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
parses data input string into an array of lines (Strings)
parseId(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
Parses a dotted notation id into a file path.
parseIdFromMessage(String) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
parses the id of a file from the message that metacat returns
PASSWORD_LABEL_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PASTEKEY - Static variable in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
 
Path - class edu.ucsb.nceas.morpho.plugins.metadisplay.Path.
A path implementation to wrap the underlying data structure
Path() - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
constructor
Path(PathElementInterface) - Constructor for class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
constructor
PATHBAR_BOTTOM_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PATHBAR_SIDES_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PATHBAR_TOP_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
PathElementInterface - interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface.
This Interface is implemented by objects that may be added to a edu.ucsb.nceas.morpho.plugins.metadisplay.Path object
PersistentTableModel - class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel.
 
PersistentTableModel(PersistentVector) - Constructor for class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
PersistentTableModel(PersistentVector, Vector) - Constructor for class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
PersistentVector - class edu.ucsb.nceas.morpho.datapackage.PersistentVector.
 
PersistentVector() - Constructor for class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Constructor of PersistentVector
PluginInterface - interface edu.ucsb.nceas.morpho.plugins.PluginInterface.
All component plugins that are to be included in Morpho must implement this interface so that the services of Morpho such as menu and toolbar actions, and session control, are available to the plugin component.
previewPreviousID() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
Looks at the String identifier that was most recently added to history, without actually removing it from history
print(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
This method can 'print' any DOM subtree.
print(Node) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
This method can 'print' any DOM subtree.
print(Node) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
This method can 'print' any DOM subtree.
printDoc(XMLElement) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
prints a string representation of the doc object
printDoctype(Document) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
prints out the doctype part of and xml document.
printExtendedSQL(String) - Method in class edu.ucsb.nceas.morpho.query.Query
This method prints sql based upon the <returnfield> tag in the pathquery document.
printGetDocByDoctypeSQL(String) - Static method in class edu.ucsb.nceas.morpho.query.Query
 
printPackageSQL() - Static method in class edu.ucsb.nceas.morpho.query.Query
Prints sql that returns all relations in the database.
printPackageSQL(String) - Static method in class edu.ucsb.nceas.morpho.query.Query
Prints sql that returns all relations in the database that were input under a specific docid
printPackageSQL(String, String) - Static method in class edu.ucsb.nceas.morpho.query.Query
Returns all of the relations that has a certain docid in the subject or the object.
printRelationSQL(String) - Static method in class edu.ucsb.nceas.morpho.query.Query
 
printSQL(boolean) - Method in class edu.ucsb.nceas.morpho.query.Query
create a SQL serialization of the query that this instance represents
printSQL(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
create a SQL serialization of the query that this instance represents
printSQL(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
create a SQL serialization of the query that this instance represents
processingInstruction(String, String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
profileAdded(String) - Method in interface edu.ucsb.nceas.morpho.framework.ProfileAddedListener
This method is called if a new profile has been created
ProfileAddedListener - interface edu.ucsb.nceas.morpho.framework.ProfileAddedListener.
Any object that is interested in the creation of new Profiles by the Morpho framework should implement this interface and register with the framework to be notified of such changes
ProfileDialog - class edu.ucsb.nceas.morpho.framework.ProfileDialog.
A graphical window for creating a new user profile with user provided information.
ProfileDialog(Morpho) - Constructor for class edu.ucsb.nceas.morpho.framework.ProfileDialog
Construct a dialog and set the framework
ProfileDialog(Morpho, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.ProfileDialog
Construct the dialog
ProgressIndicator - class edu.ucsb.nceas.morpho.framework.ProgressIndicator.
The ProgressIndicator extends JLabel to display a progress image.
ProgressIndicator(ImageIcon, ImageIcon) - Constructor for class edu.ucsb.nceas.morpho.framework.ProgressIndicator
Creates a new instance of ProgressIndicator
PULL_RIGHT_MENU - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 

Q

Query - class edu.ucsb.nceas.morpho.query.Query.
A Class that represents a structured query, and can be constructed from an XML serialization conforming to @see pathquery.dtd.
Query(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.Query
construct an instance of the Query class, manually setting the Query constraints rather that readin from an XML stream
Query(Reader, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.Query
construct an instance of the Query class from an XML Stream
Query(String, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.Query
construct an instance of the Query class from an XML String
QueryDialog - class edu.ucsb.nceas.morpho.query.QueryDialog.
Dialog which collects search information from user to be used to create a Query
QueryDialog(Frame, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.QueryDialog
Construct a new instance of the query dialog
QueryGroup - class edu.ucsb.nceas.morpho.query.QueryGroup.
A group of terms and other groups in a query, allowing arbitrarily nested hierarchiies that can be combined using union or intersection.
QueryGroup(String) - Constructor for class edu.ucsb.nceas.morpho.query.QueryGroup
construct a new QueryGroup
QueryPlugin - class edu.ucsb.nceas.morpho.query.QueryPlugin.
 
QueryPlugin() - Constructor for class edu.ucsb.nceas.morpho.query.QueryPlugin
Construct the query plugin.
QueryRefreshInterface - interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface.
This service allows plugins to request that the query results be refreshed when they have made a change that should affect the resultset.
QueryTerm - class edu.ucsb.nceas.morpho.query.QueryTerm.
A single term in a query, containing the path to be searched, the value to match, and any relevant search modifiers.
QueryTerm(boolean, String, String) - Constructor for class edu.ucsb.nceas.morpho.query.QueryTerm
Construct a new instance of a query term for a free text search (using the value only)
QueryTerm(boolean, String, String, String) - Constructor for class edu.ucsb.nceas.morpho.query.QueryTerm
Construct a new instance of a query term for a structured search (matching the value only for those nodes in the pathexpr)

R

readObject(long) - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
redisplay() - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to redisplay the current metadata, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
redisplay() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to redisplay the current metadata, by re-obtaining the latest instance of the XML document from the XMLFactoryInterface and re-styling it
REFRESH_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
refresh() - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
This method is called to refresh the main query when a change is made that should be propogated to the query result screens.
refresh() - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
This method is called to refresh a query when a change is made that should be propogated to the query result screens.
RefreshCommand - class edu.ucsb.nceas.morpho.query.RefreshCommand.
Class to handle refresh command
RefreshCommand() - Constructor for class edu.ucsb.nceas.morpho.query.RefreshCommand
Constructor of refreshCommand There is no parameter, means it will refresh current active morpho frame
RefreshCommand(MorphoFrame) - Constructor for class edu.ucsb.nceas.morpho.query.RefreshCommand
Constructor of RefreshCommand
RefreshCommand(OpenDialogBox) - Constructor for class edu.ucsb.nceas.morpho.query.RefreshCommand
Constructor of RefreshCommand
refreshWindows() - Method in class edu.ucsb.nceas.morpho.framework.UIController
refresh all visible the windows that are in the windowList.
registerOpenButton(JButton) - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to register a open button
registerResultPanel(JPanel) - Method in class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
Method to register a resultPanel
REGULAR - Static variable in class edu.ucsb.nceas.morpho.query.ExportCommand
 
removeActionListener(ActionListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Remove this java.awt.event.ActionListener from the list of registered listeners
removeActionListener(ActionListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Remove this java.awt.event.ActionListener from the list of registered listeners
removeAllElements() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
removeAllTransformerProperties() - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
removes all name/value pairs from the Properties object containing the properties to be set for the transformer
removeAllWindows() - Method in class edu.ucsb.nceas.morpho.framework.UIController
Method to remove all windows in window list
removeChildren(String, int) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
removes all children of the specified parent
removeEditingCompleteListener(EditingCompleteListener) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Remove this EditingCompleteListener from the list of registered listeners
removeEditingCompleteListener(EditingCompleteListener) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Remove this EditingCompleteListener from the list of registered listeners
removeElementAt(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
removeFromCache(String) - Static method in class edu.ucsb.nceas.morpho.query.LocalQuery
 
removeGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Remove a GUIAction from the menu and toolbar for this frame.
removeGuiAction(GUIAction) - Method in class edu.ucsb.nceas.morpho.framework.UIController
Remove a menu item and its toolbar button for a particular instance of GUIAction.
removeLast() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
Deletes the PathElement that is currently at the end of the path
removeNode(String, int) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
deletes indicated node
removePVObject() - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
removeStateChangeListener(String, StateChangeListener) - Method in class edu.ucsb.nceas.morpho.util.StateChangeMonitor
This method is called by objects to remove a listener for changes in the application state.
removeTransformerProperty(String) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
removes a name/value pair from the Properties object containing the properties to be set for the transformer
removeTriple(Triple) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
removes the specified triple from the collection and returns it.
removeWindow(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.framework.UIController
This method is called to de-register a Window that the plugin has created.
resetColumnHeader(String) - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
 
resetRollovers() - Method in class edu.ucsb.nceas.morpho.util.HyperlinkButton
 
ResultPanel - class edu.ucsb.nceas.morpho.query.ResultPanel.
Display a ResultSet in a table view in a panel that can be embedded in a window or tab or other location
ResultPanel(OpenDialogBox, ResultSet, int, ResultPanelAndFrameMediator, Dimension) - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanel
Construct a new ResultPanel and display the result set
ResultPanel(OpenDialogBox, ResultSet, ResultPanelAndFrameMediator) - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanel
Construct a new ResultPanel and display the result set.
ResultPanel(OpenDialogBox, ResultSet, ResultPanelAndFrameMediator, Dimension) - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanel
Construct a new ResultPanel and display the result set.
ResultPanelAndFrameMediator - class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator.
This class is a mediator between components: Resultset table and open button If there is a selection in the table, open button will enable.
ResultPanelAndFrameMediator() - Constructor for class edu.ucsb.nceas.morpho.query.ResultPanelAndFrameMediator
 
ResultSet - class edu.ucsb.nceas.morpho.query.ResultSet.
A ResultSet encapsulates the list of results returned from either a local query or a Metacat query.
ResultSet(Query, String, InputStream, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.ResultSet
Construct a ResultSet instance given a query object and a InputStream that represents an XML encoding of the results.
ResultSet(Query, String, Vector, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.ResultSet
Construct a ResultSet instance from a vector of vectors; for use with LocalQuery
resultsVector - Variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store each row of the result set as a row in a Vector
returnErrors() - Method in class edu.ucsb.nceas.morpho.util.DBValidate
provide a list of errors from the validation process
ReviseSearchCommand - class edu.ucsb.nceas.morpho.query.ReviseSearchCommand.
Class to handle search command
ReviseSearchCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.ReviseSearchCommand
Constructor of SearcCommand
rootNode - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
Description of the Field
rootNode - Variable in class edu.ucsb.nceas.morpho.editor.DTDTree
 
run() - Method in class edu.ucsb.nceas.morpho.framework.ProgressIndicator
 
RunSavedQueryCommand - class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand.
Class to handle click a saved query menu item
RunSavedQueryCommand(Query) - Constructor for class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
Constructor of SearcCommand

S

save_flag - Variable in class edu.ucsb.nceas.morpho.framework.TextImportWizard
 
SAVE_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
save() - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
Save the DOM doc as a file
save() - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Save the configuration file
save() - Method in class edu.ucsb.nceas.morpho.query.Query
Save an XML serialized version of the query in the profile directory
save(String, Document, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Save the DOM doc as a file
saveAsFile(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
saveDataFile(String, InputStream) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveDataFile(String, InputStream, String, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
A variant of saveFile designed for use with Data Files.
saveDataFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveDataFile(String, Reader, String, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
A variant of saveFile designed for use with Data Files.
saveDOM(Node) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
saveDOM(Node) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
saveDOM(String, Document, String, Morpho) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
This method wraps the 'print' method to send DOM back to the XML document (file) that was used to create the DOM.
saveFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveFile(String, Reader, DataPackage) - Method in interface edu.ucsb.nceas.morpho.datastore.DataStoreInterface
save a file to the datastore with the id of name.
saveFile(String, Reader, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.DataStore
 
saveFile(String, Reader, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveFile(String, Reader, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
Save an xml metadata file (which already exists) to metacat using the "update" action.
saveFile(String, Reader, DataPackage, boolean) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
 
saveFile(String, Reader, String, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
Saves a file with the given name.
saveFilesTransaction(Vector, Vector, DataPackage) - Method in class edu.ucsb.nceas.morpho.datastore.MetacatDataStore
 
SaveQueryCommand - class edu.ucsb.nceas.morpho.query.SaveQueryCommand.
Class to handle savequery command
SaveQueryCommand(Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.SaveQueryCommand
Constructor of SearcCommand
saveTempDataFile(String, InputStream) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveTempDataFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
saveTempFile(String, Reader) - Method in class edu.ucsb.nceas.morpho.datastore.FileSystemDataStore
 
SEARCH_COMMAND - Static variable in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
Denotes an instance of the SearchCommand object
SEARCH_ICON - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SEARCH_ICON_ROLLOVER - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SEARCH_LINK_TEXT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SEARCH_RESULT_NONSELECTED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that no entry in a search result frame has been selected,
SEARCH_RESULT_SELECTED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected,
SEARCH_RESULT_SELECTED_NO_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that no previous versions of the selected package are available
SEARCH_RESULT_SELECTED_SYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that the local and network versions of the selected package *are* in sync
SEARCH_RESULT_SELECTED_UNSYNCHRONIZED - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that the local and network versions of the selected package are *not* in sync
SEARCH_RESULT_SELECTED_VERSIONS - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that an entry in a search result frame has been selected, and that previous versions of the selected package *are* available
SearchCommand - class edu.ucsb.nceas.morpho.query.SearchCommand.
Class to handle search command
SearchCommand(OpenDialogBox, Morpho) - Constructor for class edu.ucsb.nceas.morpho.query.SearchCommand
Constructor of SearcCommand
SEARCHRESULTFRAME - Static variable in class edu.ucsb.nceas.morpho.framework.MorphoFrame
 
SELECT_DATATABLE_COLUMN - Static variable in class edu.ucsb.nceas.morpho.util.StateChangeEvent
Public constant to denote that a data table column has been selected
SELECTED_ATTRIBS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
SELECTED_ATTRIBS_XSLPROP used to identify selected attribute(s) when clicking on col headers (NOTE - identified by column index (0..n) - not by attribute ID:
sendDataFile(String, File) - Method in class edu.ucsb.nceas.morpho.Morpho
sends a data file to the metacat using "multipart/form-data" encoding
sendGetMessage() - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Performs a GET request to the previously given servlet with no query string
sendGetMessage(Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Performs a GET request to the previously given servlet Builds a query string from the supplied Properties list.
sendPostData(Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Sends post data using url encoding.
sendPostData(Properties, Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Sends post data using multipart/form-data encoding.
sendPostMessage() - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Performs a POST request with no query parameters
sendPostMessage(Properties) - Method in class edu.ucsb.nceas.morpho.framework.HttpMessage
Deprecated. Replaced by #sendPostData(Properties args)
separator - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
SEPARATOR_FOLLOWING - Static variable in class edu.ucsb.nceas.morpho.Morpho
Constant to indicate a separator should follow an action
SEPARATOR_FOLLOWING - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
SEPARATOR_PRECEDING - Static variable in class edu.ucsb.nceas.morpho.Morpho
Constant to indicate a separator should precede an action
SEPARATOR_PRECEDING - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 
ServiceController - class edu.ucsb.nceas.morpho.plugins.ServiceController.
The ServiceController handles the registration of services and service lookup for other objects.
ServiceExistsException - exception edu.ucsb.nceas.morpho.plugins.ServiceExistsException.
This exception is thrown when a plug registers a service under a serviceName that has previously been registered.
ServiceExistsException(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.ServiceExistsException
 
ServiceNotHandledException - exception edu.ucsb.nceas.morpho.plugins.ServiceNotHandledException.
This exception is thrown when a service request is made of an object and that object can not properly handle the request, either because it is not designed to handle it, or there was an error in trying to handle it.
ServiceNotHandledException(String) - Constructor for class edu.ucsb.nceas.morpho.plugins.ServiceNotHandledException
 
ServiceProvider - interface edu.ucsb.nceas.morpho.plugins.ServiceProvider.
All component plugins that provide services must implement this interface so that the framework can identify them.
set_strings() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
set(String, int, String) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
used to set a value corresponding to 'key'; value is changed in DOM structure in memory
setAbstractState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of Abstract check box
setAcceleratorKey(KeyStroke) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Method to set accelerator key
setAcceleratorKeyString(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
set a accelerator key for this action
setAllState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of 'All' check box
setAttribute(String, String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Add a new attribute to this node, or set its value
setAttributeFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setAttributeWizard(PackageWizard) - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
reference to a packagewizard used to pass a fixed XML string to a PackageWizard
setBackButtonEnabled(boolean) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
set enabled/disabled state of Back Button (primarily to allow disabling when there is no previous page in History to go back to)
setBusy(boolean) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the ProgressIndicator to either the busy or notBusy state.
setBusy(boolean) - Method in class edu.ucsb.nceas.morpho.framework.ProgressIndicator
 
setBusyFlag(boolean) - Method in class edu.ucsb.nceas.morpho.framework.ProgressIndicator
 
setCardinality(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setCaseSensitive(boolean) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set if the QueryTerm is case sensitive
setChoice(boolean) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setClipboardObject(Object) - Method in class edu.ucsb.nceas.morpho.editor.EditorPlugin
 
setColumnData(ColumnData) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setColumnDefinition(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setColumnLabel(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setColumnLabels(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to set the column_lables
setColumnName(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setCommand(Command) - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
sets the edu.ucsb.nceas.morpho.util.Command for this item.
setCommand(Command) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the command in this action object
setCommandOnStateChange(String, Command, int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the state of this action to the enabled value if a state change matching changedState occurs.
setConnectStatus(boolean) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the "connection status" icon
setContainer(DocFrame) - Method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
setController(EditorPlugin) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the Controller attribute of the DocFrame object
setCookie(String) - Static method in class edu.ucsb.nceas.morpho.framework.HttpMessage
return the cookie that this message object contains
setCurrentActiveWindow(MorphoFrame) - Method in class edu.ucsb.nceas.morpho.framework.UIController
set currently active window
setDataID(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setDataPackage(DataPackage) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setDataType(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setDebug(boolean) - Static method in class edu.ucsb.nceas.morpho.util.Log
Turn debugging on or off
setDebugLevel(int) - Static method in class edu.ucsb.nceas.morpho.util.Log
Set the threshold severity for debugging output
setDefaultIcon(Icon) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the default icon.
setDisplayName(String) - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
sets the text display name for this item.
setDocID(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the doc id of this node
setDoctype(String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the Doctype attribute of the DocFrame object
setDocumentLocator(Locator) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
setEditor(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setElementAt(Serializable, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setEnabledOnStateChange(String, boolean, int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the state of this action to the enabled value if a state change matching changedState occurs.
setEntityFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setEntityFileId(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setEntityItems(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setEntityResolver(EntityResolver) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Sets the EntityResolver for the XML parser that will be used by this transformer.
setEntityWizard(PackageWizard) - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
reference to a packagewizard used to pass a fixed XML string to a PackageWizard
setEnumButton(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setFactory(XMLFactoryInterface) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Set the current XML factory, used to resolve IDs into XML documents
setFieldDelimiter(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setFieldDelimiter(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setFile(File) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the File attribute of the DocFrame object
setFilterDocList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of filter docs of this query
setFirstRow(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setFramework(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setHeaderLinesVector(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to set a vector as a header lines vector
setHelp(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setHTML(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplayUI
set content in the embedded HTMLPanel object
setHTML(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HTMLPanel
set the HTML content
setIcon(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setIdentifier(String) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the identifier of this query
setIndexOfSortedColumn(int) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Set the index of sorted column
setInMemoryNum(int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
setItem(Object) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setKeywordsState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of Keywords check box
setListValueHash(Hashtable) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setLogFlag(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setLoginStatus(boolean) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the "login status" icon
setLoginSuccessful(boolean) - Method in interface edu.ucsb.nceas.morpho.framework.LoginClientInterface
notifies client whether login was successful or not
setLoginSuccessful(boolean) - Method in class edu.ucsb.nceas.morpho.framework.ConnectionFrame
notifies client whether login was successful or not
setLogStack(Stack) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setMainContentPane(Component) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the content pane of the main Morpho window to display the component indicated.
setMaximum(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setMenu(String, int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Sets the menu and its position for this action
setMenuBar(JMenuBar) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the menu bar when it needs to be changed.
setMenuItemPosition(int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the menu item position for this action
setMessage(String) - Method in class edu.ucsb.nceas.morpho.framework.MorphoFrame
Set the StatusBar to display a message
setMessage(String) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the text message to display
setMinimum(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setMissingValue(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setMorpho(Morpho) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setName(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setNodeID(long) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the id of this node
setNodeIndex(int) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the node index of this node
setNodeType(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the type of this node
setNumButton(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setObject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
Set the object of this triple
setObjectList(Vector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method to assign a vector to objectList
setOperator(String) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
Set the operator for this QueryGroup
setOrderOfSortedColumn(String) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Set the order of sorted column
setOwnerList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of owners used to constrain this query
setParentID(long) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the parent id of this node
setPassword(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the password associated with this framework
setPathExpression(String) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set the path expression parameter
setPCValue(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setPersistentVector(PersistentVector) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setPhysicalFile(File) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
 
setPhysicalWizard(PackageWizard) - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
reference to a packagewizard used to pass a fixed XML string to a PackageWizard
setPrecision(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setPreviousElement(PathElementInterface) - Method in interface edu.ucsb.nceas.morpho.plugins.metadisplay.PathElementInterface
sets the previous PathElementInterface in the path
setProfile(ConfigXML) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile for the currently logged in user (on startup, or when switching profiles).
setProfile(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile associated with this framework based on its name
setProfileDontLogin(ConfigXML) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile for the currently logged in user, but does not popup a login dialog
setProfileDontLogin(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the profile associated with this framework based on its name, but does not popup a login dialog
setQuery(Query) - Method in class edu.ucsb.nceas.morpho.query.QueryDialog
Set the query that should be displayed and edited in the dialog
setQuery(Query) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Set the query that was used to construct these results (for use by LocalQuery)
setQuery(Query) - Method in class edu.ucsb.nceas.morpho.query.RunSavedQueryCommand
Set query to this object
setQueryGroup(QueryGroup) - Method in class edu.ucsb.nceas.morpho.query.Query
set the QueryGroup used to express query constraints
setQueryTitle(String) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the title of this query
setRelationship(String) - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
Set the relationship of this triple
setResultPanel(ResultPanel) - Method in class edu.ucsb.nceas.morpho.query.OpenDialogBox
Method to set a resultpanel to the dialog
setResultsVector(Vector) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
set the resultsVector
setReturnDocList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of return docs of this query
setReturnFieldList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of fields to be returned by this query
setRolloverSmallIcon(Icon) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the *rollover* small Icon to be displayed on toolbar buttons
setRolloverTextLabel(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the *rollover* text label to be displayed on toolbar buttons (mainly used for HTML text, where only the color or font face changes)
setRootEditor(String) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setRootElementName(String) - Method in class edu.ucsb.nceas.morpho.editor.DTDTree
 
setRootNodeID(long) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the root node id of this node
setSearchLocal(boolean) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set searchLocal
setSearchMetacat(boolean) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set searchMetacat
setSearchMode(String) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set the search mode field
setSearchMode(String) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set the searchmode parameter
setSearchMode(String) - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
set the search mode field
setSelected(boolean) - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
setSeparatorPosition(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the separator for this action
setSiteList(Vector) - Method in class edu.ucsb.nceas.morpho.query.Query
method to set the list of sites used to constrain this query
setSmallIcon(Icon) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the small Icon to be displayed on toolbar buttons & menus.
setSortDirection(int) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method to set sort direction
setSorted(boolean) - Method in class edu.ucsb.nceas.morpho.util.SortableJTable
Set the table sorted or not
setSource(JTable) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
setSource(JTable) - Method in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
setSSLStatus(boolean) - Method in class edu.ucsb.nceas.morpho.framework.StatusBar
Sets the "ssl status" icon
setSubject(String) - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
Set the subject of this triple
setSubMenu(boolean) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the action pull right submenu
setSubMenuPath(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the action path for sub menu or sub menuitem.
setTagName(String) - Method in class edu.ucsb.nceas.morpho.query.BasicNode
Set the name of this node
setTarget(JTable) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
setTaxonRank(String) - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
set the taxon rank field
settextButton(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setTextDefinition(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setTextImportWizard(TextImportWizard) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setTextLabel(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the text for the display label
setTextPattern(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setTextSource(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setTitle(String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
Set the title in the titlebar
setTitle(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
Set the title in the titlebar
setTitleBarColor(Color) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
set color of title bar (ie main part of header above path bar) this may need to be called for example to change titlebar color for focus/non-focus indocation
setTitleBarText(String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.HeaderPanel
set text of title bar (ie main part of header above path bar)
setTitleState(boolean) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set state of Title check box
setTmpDir(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
Method set tmp directory for Object file
setToolbarPosition(int) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
Set the position of this action on the toolbar.
setToolTipText(String) - Method in class edu.ucsb.nceas.morpho.util.GUIAction
sets the text to be displayed as a mouse-over tooltip
setTopPanel(JPanel) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
setTransformerProperties(Properties) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
The Properties object passed to this method will be used to set all the name/value pairs describing the properties to be set for the transformer.
setTree(JTree) - Method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
setTreeModel(DefaultTreeModel) - Method in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
setTreeValueFlag(boolean) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the TreeValueFlag attribute of the DocFrame object
setUnit(String) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
 
setUserName(String) - Method in class edu.ucsb.nceas.morpho.Morpho
Set the username associated with this framework
setValue(String) - Method in class edu.ucsb.nceas.morpho.datapackage.DelimiterField
Method to set a stirng value
setValue(String) - Method in class edu.ucsb.nceas.morpho.query.SubjectTermPanel
set the text that is to be seached for.
setValue(String) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
set the value parameter
setValue(String) - Method in class edu.ucsb.nceas.morpho.query.TaxonTermPanel
set the text that is to be seached for.
setValueAt(JTable, int, int, String) - Method in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
setValueAt(Object, int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
 
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
sets the visibility of the package wizard panel
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
Sets the Visible attribute of the DocFrame object
setVisible(boolean) - Method in class edu.ucsb.nceas.morpho.framework.SplashFrame
Show or hide the window.
setXMLString(String) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizard
set the xmlString parameter
SHOWEVERYTHING - Static variable in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
showImportDataScreen() - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
Method only show the import data screen
showInsertEnumPanel(boolean) - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
 
size() - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
skippedEntity(String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
sort(int, int) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentTableModel
sorts the table; set sortdir=1 for ascending set sortdir = -1 for descending
SortableJTable - class edu.ucsb.nceas.morpho.util.SortableJTable.
A classs represent sortable table
SortableJTable(ColumnSortableTableModel) - Constructor for class edu.ucsb.nceas.morpho.util.SortableJTable
Constructor of SortableJTable
SortableTableHeaderCellRenderer - class edu.ucsb.nceas.morpho.util.SortableTableHeaderCellRenderer.
The class for Renderer of sortable table header cell
SortableTableHeaderCellRenderer() - Constructor for class edu.ucsb.nceas.morpho.util.SortableTableHeaderCellRenderer
Consturctor of SortableHeaderCellRender
sortAttributes(NamedNodeMap) - Method in class edu.ucsb.nceas.morpho.datapackage.ColumnMetadataEditPanel
Returns a sorted list of attributes.
sortAttributes(NamedNodeMap) - Static method in class edu.ucsb.nceas.morpho.datapackage.PackageUtil
Returns a sorted list of attributes.
sortAttributes(NamedNodeMap) - Method in class edu.ucsb.nceas.morpho.framework.ConfigXML
Returns a sorted list of attributes.
SortDataTableCommand - class edu.ucsb.nceas.morpho.datapackage.SortDataTableCommand.
Class to handle sort data table command
SortDataTableCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.SortDataTableCommand
Constructor of sort data table command
sortTable(int, String) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Method to sort the table in result panel
sortTableByColumn(int, String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Method implements from SortTableModel.
sortTableByColumn(int, String) - Method in class edu.ucsb.nceas.morpho.query.HeadResultSet
Method implements from SortTableModel.
sortTableByColumn(int, String) - Method in interface edu.ucsb.nceas.morpho.util.ColumnSortableTableModel
 
SortTableCommand - class edu.ucsb.nceas.morpho.util.SortTableCommand.
Class to handle sorting table command
SortTableCommand(JTable, int, String) - Constructor for class edu.ucsb.nceas.morpho.util.SortTableCommand
Constructor of SortableCommand
source - Variable in class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
 
source - Variable in class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
 
SplashFrame - class edu.ucsb.nceas.morpho.framework.SplashFrame.
GUI window that provides information about Morpho, its contributors, and acknowlegements.
SplashFrame() - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct the window with defaults
SplashFrame(boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct a frame and display a note that the application is loading.
SplashFrame(String) - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct a frame with a title
SplashFrame(String, boolean) - Constructor for class edu.ucsb.nceas.morpho.framework.SplashFrame
Construct a frame and optionally display a note that the application is loading.
start() - Method in class edu.ucsb.nceas.morpho.framework.SwingWorker
Start the worker thread.
startDocument() - Method in class edu.ucsb.nceas.morpho.query.ResultSet
SAX handler callback that is called when an XML document is initially parsed.
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardShellParser
This method is called whenever a new start tag is encountered.
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.datapackage.wizard.PackageWizardParser
This method is called whenever a new start tag is encountered.
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.query.Query
callback method used by the SAX Parser when the start tag of an element is detected.
startElement(String, String, String, Attributes) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
SAX handler callback that is called upon the start of an element when parsing an XML document.
startFlap() - Method in interface edu.ucsb.nceas.morpho.framework.ButterflyFlapCoordinator
Method to start butterfly flapping in a morpho frame
startFlap() - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Method implements from ButterflyFlapCoordinator
startImport(String) - Method in class edu.ucsb.nceas.morpho.framework.TextImportWizard
 
startPrefixMapping(String, String) - Method in class edu.ucsb.nceas.morpho.query.ResultSet
Unused SAX handler
stateChanged(ChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
 
StateChangeEvent - class edu.ucsb.nceas.morpho.util.StateChangeEvent.
An event that represents a state change in the application, showing both the state that changed and the source of the state change.
StateChangeEvent(Component, String) - Constructor for class edu.ucsb.nceas.morpho.util.StateChangeEvent
Construct a new StateChange event.
StateChangeListener - interface edu.ucsb.nceas.morpho.util.StateChangeListener.
Any object that is interested in the status of the morpho framework state changed events should implement this interface and register with the StateChangeMonitor to be notified of changes.
StateChangeMonitor - class edu.ucsb.nceas.morpho.util.StateChangeMonitor.
Maintain a registry of objects that are interested in changes in application state.
StatusBar - class edu.ucsb.nceas.morpho.framework.StatusBar.
A graphical status bar for displaying information about network and login status.
StatusBar() - Constructor for class edu.ucsb.nceas.morpho.framework.StatusBar
Constructor - creates the StatusBar and initializes its state
stopFlap() - Method in interface edu.ucsb.nceas.morpho.framework.ButterflyFlapCoordinator
Method to stop butterfly flapping in a morpho frame
stopFlap() - Method in class edu.ucsb.nceas.morpho.query.OpenPackageCommand
Method implements from ButterflyFlapCoordinator
StoreStateChangeEvent - interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent.
In order to handle local event, we need to compare the parent of event's source and GUIAction'parent.
storingStateChangeEvent(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewer
Method implements form StoreStateChangeEvent This method will be called to store a event
storingStateChangeEvent(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataViewContainerPanel
Method implements form StoreStateChangeEvent This method will be called to store a event
storingStateChangeEvent(StateChangeEvent) - Method in class edu.ucsb.nceas.morpho.query.ResultPanel
Method implements form StoreStateChangeEvent This method will be called to store a event
storingStateChangeEvent(StateChangeEvent) - Method in interface edu.ucsb.nceas.morpho.util.StoreStateChangeEvent
This method is called if a StateChangeEvent need to be stored
SubjectTermPanel - class edu.ucsb.nceas.morpho.query.SubjectTermPanel.
This panel contains all the elements for a single text query term.
SubjectTermPanel() - Constructor for class edu.ucsb.nceas.morpho.query.SubjectTermPanel
Constructor
SUBPANEL_TITLE_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
SUPPRESS_TRIPLES_DELIMETER - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to delimit the list of all module ID(s) to be suppressed in DataPackage metaview.
SUPPRESS_TRIPLES_OBJECTS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold a list of all module ID(s) to be suppressed in DataPackage metaview.
SUPPRESS_TRIPLES_SUBJECTS_XSLPROP - Static variable in class edu.ucsb.nceas.morpho.util.XMLTransformer
used to hold a list of all module ID(s) to be suppressed in DataPackage metaview.
SURNAMEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of surname in resultsVector
SwingWorker - class edu.ucsb.nceas.morpho.framework.SwingWorker.
This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread.
SwingWorker() - Constructor for class edu.ucsb.nceas.morpho.framework.SwingWorker
Start a thread that will call the construct method and then exit.
SynchronizeDialog - class edu.ucsb.nceas.morpho.query.SynchronizeDialog.
A dialog box for user to synchronize data package
SynchronizeDialog(MorphoFrame, String, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.SynchronizeDialog
Construct a new instance of the synchronize dialog which's parent is morpho frame
SynchronizeDialog(OpenDialogBox, MorphoFrame, String, boolean, boolean) - Constructor for class edu.ucsb.nceas.morpho.query.SynchronizeDialog
Construct a new instance of the synchronize dialog which's parent is a open dialog

T

table - Variable in class edu.ucsb.nceas.morpho.editor.AttributeEditDialog
 
table - Variable in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
tableChanged(TableModelEvent) - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
TableCopyCommand - class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand.
Class to handle table paste command
TableCopyCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TableCopyCommand
Constructor of paste command
TableCutCommand - class edu.ucsb.nceas.morpho.datapackage.TableCutCommand.
Class to handle table paste command
TableCutCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TableCutCommand
Constructor of paste command
TableDataToNodes() - Method in class edu.ucsb.nceas.morpho.editor.LocalDocTypesPanel
 
TablePasteCommand - class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand.
Class to handle table paste command
TablePasteCommand() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
Constructor of paste command
target - Variable in class edu.ucsb.nceas.morpho.datapackage.TablePasteCommand
 
TASKBAR_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
a guess at how high most taskbars will be (in pixels)
TaxonTermPanel - class edu.ucsb.nceas.morpho.query.TaxonTermPanel.
This panel contains all the elements for a single taxon query term.
TaxonTermPanel() - Constructor for class edu.ucsb.nceas.morpho.query.TaxonTermPanel
Constructor
tempdir - Variable in class edu.ucsb.nceas.morpho.datastore.DataStore
 
TextAreaPanel - class edu.ucsb.nceas.morpho.editor.TextAreaPanel.
TextAreaPanel is an example of a special panel editor for use with the DocFrame class.
TextAreaPanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.TextAreaPanel
 
textChoice - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
TextImportListener - interface edu.ucsb.nceas.morpho.framework.TextImportListener.
This listener is called when the TextImportWizard either finishes or is canceled
TextImportResultsFrame - class edu.ucsb.nceas.morpho.framework.TextImportResultsFrame.
A window whose purpose is to display the results string created from the data parsing.
TextImportResultsFrame() - Constructor for class edu.ucsb.nceas.morpho.framework.TextImportResultsFrame
 
TextImportResultsFrame(String) - Constructor for class edu.ucsb.nceas.morpho.framework.TextImportResultsFrame
 
TextImportWizard - class edu.ucsb.nceas.morpho.framework.TextImportWizard.
'Text Import Wizard' is modeled after the text import wizard in Excel.
TextImportWizard(String, TextImportListener) - Constructor for class edu.ucsb.nceas.morpho.framework.TextImportWizard
 
TITLE_CITATION_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_CITATION_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_CITATION_FONT_BOLD - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_CITATION_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_FONT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_LOCATION_WIDTH - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLE_TEXT_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
Color for text on title bars of sub-windows in datapackage view (i.e.
TITLEBAR_BOTTOM_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_COMPONENT_HEIGHT - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_DIMS - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_SIDES_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEBAR_TOP_PADDING - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
TITLEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of titl in resultsVector
titleRefLabel - Variable in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
toFormatedXML() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple in xml format with easy to read formatting.
toFormatedXML() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a nicely formatted string representation of this collection in xml the xml looks like this:
ToolTippedSortableJTable - class edu.ucsb.nceas.morpho.query.ToolTippedSortableJTable.
A classs represent sortable table
ToolTippedSortableJTable(ColumnSortableTableModel) - Constructor for class edu.ucsb.nceas.morpho.query.ToolTippedSortableJTable
Constructor of ToolTippedSortableJTable
ToolTippedTextRenderer - class edu.ucsb.nceas.morpho.query.ToolTippedTextRenderer.
Renders the contents of a table cell with tool tip
ToolTippedTextRenderer(int) - Constructor for class edu.ucsb.nceas.morpho.query.ToolTippedTextRenderer
Create the renderer with appropriate formatting options set
topPanel - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
toString() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple as a string
toString() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
return this collection as a string
toString() - Method in class edu.ucsb.nceas.morpho.editor.NodeInfo
 
toString() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.History
returns a String representation of all the elements in the History, without actually removing them from history
toString() - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.Path
returns a String representation of all the elements in the Path,
toString() - Method in class edu.ucsb.nceas.morpho.query.Query
create a String description of the query that this instance represents.
toString() - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
create a String description of the query that this instance represents.
toString() - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
create a String description of the query that this instance represents.
toXml() - Method in class edu.ucsb.nceas.morpho.query.Query
create a XML serialization of the query that this instance represents
toXML() - Method in class edu.ucsb.nceas.morpho.datapackage.Triple
return this triple in xml format.
toXML() - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
 
toXml(int) - Method in class edu.ucsb.nceas.morpho.query.QueryGroup
create a XML serialization of the query that this instance represents
toXml(int) - Method in class edu.ucsb.nceas.morpho.query.QueryTerm
create a XML serialization of the query that this instance represents
toXML(String) - Method in class edu.ucsb.nceas.morpho.datapackage.TripleCollection
returns a string representation of this collection in xml format.
transform(Document) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
transforms the passed XML document, using a "generic" stylesheet, whose name is obtained from the config.xml file
transform(Document, Reader) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Uses the stylesheet provided, to apply XSLT to the XML DOM Document provided
transform(Reader) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
transforms the passed XML document, using a "generic" stylesheet, whose name is obtained from the config.xml file
transform(Reader, Reader) - Method in class edu.ucsb.nceas.morpho.util.XMLTransformer
Uses the stylesheet provided, to apply XSLT to the XML document provided
tree - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
Description of the Field
tree - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
treeModel - Variable in class edu.ucsb.nceas.morpho.editor.DocFrame
Description of the Field
treeModel - Variable in class edu.ucsb.nceas.morpho.editor.XMLPanels
 
treeModel - Variable in class edu.ucsb.nceas.morpho.editor.DTDTree
 
Triple - class edu.ucsb.nceas.morpho.datapackage.Triple.
This class implements one triple which defines one relationship inside of a package.
Triple() - Constructor for class edu.ucsb.nceas.morpho.datapackage.Triple
create an initialized, blank Triple object
Triple(String, String, String) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Triple
create a new triple with the specified subject relationship and object
Triple(Triple) - Constructor for class edu.ucsb.nceas.morpho.datapackage.Triple
Copy constructor.
TripleCollection - class edu.ucsb.nceas.morpho.datapackage.TripleCollection.
This class implements a collection of triples which make up all of the relationships in a package.
TripleCollection() - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
Default Constructor
TripleCollection(File, Morpho) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
parses an xml document and pulls any triples out of it.
TripleCollection(Reader) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
read an xml file, build the collection from any triples in the xml file.
TripleCollection(Reader, CatalogEntityResolver) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
read an xml file, build the collection from any triples in the xml file.
TripleCollection(TripleCollection) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
Copy constructor.
TripleCollection(Vector) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleCollection
create a collection of triples from a vector of Triple objects.
TRIPLEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of triple in resultsVector
TripleParser - class edu.ucsb.nceas.morpho.datapackage.TripleParser.
A Class implementing callback bethods for the SAX parser.
TripleParser(Reader) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleParser
 
TripleParser(Reader, CatalogEntityResolver) - Constructor for class edu.ucsb.nceas.morpho.datapackage.TripleParser
 

U

UIController - class edu.ucsb.nceas.morpho.framework.UIController.
The UIController handles the state of the morpho menu and toolbars so that they are synchronized across the various plugins.
UISettings - class edu.ucsb.nceas.morpho.util.UISettings.
This is a class containing static methods and attributes that define global display settings in Morpho, which can't be represented directly by string values from config.xml (such as Fonts, colors etc) N O T E : currently, this class also contains values that *could* be represented by strings in a config file - this is an interim step - one step better than hard-coding them in the UI classes, but should still be replaced by calls to a config file, ultimately.
UNFOCUSED_BORDER_COLOR - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
updateAllStatusBars() - Method in class edu.ucsb.nceas.morpho.framework.UIController
updates status bar in response to changes in connection parameters
UPDATEDATEINDEX - Static variable in class edu.ucsb.nceas.morpho.query.ResultSet
Store the index of update in resultsVector
updateSavedQueryMenuItems(Morpho) - Method in interface edu.ucsb.nceas.morpho.framework.QueryRefreshInterface
This mehod will be called when Morpho switch to another profile.
updateSavedQueryMenuItems(Morpho) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
This method implements from QueryRefreshInterface.
updateWindow(MorphoFrame, String) - Method in class edu.ucsb.nceas.morpho.framework.UIController
This method is called by plugins to update window that is an instance of MorphoFrame.
upload() - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
uploads the package with the default of automatically updating the ids when a conflict occurs.
upload(boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackage
Uploads a local package to metacat
upload(String, boolean) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackagePlugin
Uploads the package to metacat.
upload(String, boolean) - Method in interface edu.ucsb.nceas.morpho.framework.DataPackageInterface
This method is called to upload a datapackage that is currently stored locally to metacat and return a new id or orignal id.
useEnumerationList - Variable in class edu.ucsb.nceas.morpho.framework.ColumnData
 
usernameChanged(String) - Method in interface edu.ucsb.nceas.morpho.framework.ConnectionListener
This method is called if there is a change in the username.
usernameChanged(String) - Method in class edu.ucsb.nceas.morpho.query.QueryPlugin
Implement the ConnectionListener interface so we know when to refresh queries.
useTransformerProperty(String, String) - Method in interface edu.ucsb.nceas.morpho.plugins.MetaDisplayInterface
method to add a key/value transformer property pair to the properties that will be passed onto the XSL Transformation Engine, and will then be made available to the actual XSL stylesheets as values
useTransformerProperty(String, String) - Method in class edu.ucsb.nceas.morpho.plugins.metadisplay.MetaDisplay
method to add a key/value transformer property pair to the properties that will be passed onto the XSL Transformation Engine, and will then be made available to the actual XSL stylesheets as values

V

validate(String) - Method in class edu.ucsb.nceas.morpho.editor.DocFrame
 
validate(String) - Method in class edu.ucsb.nceas.morpho.util.DBValidate
validate an xml document against its DTD
validateString(String) - Method in class edu.ucsb.nceas.morpho.util.DBValidate
validate an xml document against its DTD
VariablePanel - class edu.ucsb.nceas.morpho.editor.VariablePanel.
VariablePanel is an example of a very plug-in panel to be used by the XML editor.
VariablePanel(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.VariablePanel
 
VERSION - Static variable in class edu.ucsb.nceas.morpho.Morpho
The version of this release of Morpho
VERT_SPLIT_INIT_LOCATION - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 

W

WINDOW_CASCADE_X_OFFSET - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
How many pixels to leave at each edge of initial, centered screen?
WINDOW_CASCADE_Y_OFFSET - Static variable in class edu.ucsb.nceas.morpho.util.UISettings
 
windowActivated(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowActivated(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
windowClosed(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowClosed(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
windowClosing(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowClosing(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
windowDeactivated(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowDeactivated(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
windowDeiconified(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowDeiconified(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
windowIconified(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowIconified(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
windowOpened(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.DataPackageGUI
 
windowOpened(WindowEvent) - Method in class edu.ucsb.nceas.morpho.datapackage.AddMetadataWizard
 
writeEncodedMultipartForm(OutputStream) - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Write the multipart/form-data encoded version of the form to the provided output stream, using a default bufferSize of 4096 bytes for reading in the files.
writeEncodedMultipartForm(OutputStream, int) - Method in class edu.ucsb.nceas.morpho.framework.MultipartForm
Write the multipart/form-data encoded version of the form to the provided output stream, using the provided bufferSize for reading in the files.
writeObject(Serializable) - Method in class edu.ucsb.nceas.morpho.datapackage.ObjectFile
 
writeObjects(String) - Method in class edu.ucsb.nceas.morpho.datapackage.PersistentVector
 
writeToWriter(StringBuffer, Writer, boolean) - Static method in class edu.ucsb.nceas.morpho.util.IOUtil
reads character data from the StringBuffer provided, and writes it to the Writer provided, using a buffered write.

X

XMLElement - class edu.ucsb.nceas.morpho.datapackage.wizard.XMLElement.
object that represents an Element and any content inside of it.
XMLElement() - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.XMLElement
 
XMLElement(XMLElement) - Constructor for class edu.ucsb.nceas.morpho.datapackage.wizard.XMLElement
copy constructor
XMLFactoryInterface - interface edu.ucsb.nceas.morpho.plugins.XMLFactoryInterface.
This Interface enables calling classes to gain access to resources that are identified by unique String identifiers.
XMLPanels - class edu.ucsb.nceas.morpho.editor.XMLPanels.
 
XMLPanels() - Constructor for class edu.ucsb.nceas.morpho.editor.XMLPanels
Default constructor.
XMLPanels(DefaultMutableTreeNode) - Constructor for class edu.ucsb.nceas.morpho.editor.XMLPanels
Constructs a panel tree with the specified root.
XMLPanels(DefaultMutableTreeNode, int) - Constructor for class edu.ucsb.nceas.morpho.editor.XMLPanels
Constructs a panel tree with the specified root.
XMLTransformer - class edu.ucsb.nceas.morpho.util.XMLTransformer.
XMLTransformer to style XML documents using XSLT
XMLTreeCellRenderer - class edu.ucsb.nceas.morpho.editor.XMLTreeCellRenderer.
This class is a simple extension of the DefaultTreeCell Renderer that uses an ImageIcon stored in the NodeInfo UserObject of a tree node as the icon of a node when it is displayed in a tree.
XMLTreeCellRenderer() - Constructor for class edu.ucsb.nceas.morpho.editor.XMLTreeCellRenderer
Constructor
XSLTResolverInterface - interface edu.ucsb.nceas.morpho.plugins.XSLTResolverInterface.
This interface enables access to XSLT stylesheets that are identified by unique String DOCTYPE identifiers.
XSLTResolverPlugin - class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin.
Plugin that provides a service to resolve DOCTYPES to XSLT stylesheets
XSLTResolverPlugin() - Constructor for class edu.ucsb.nceas.morpho.plugins.xsltresolver.XSLTResolverPlugin
 

Y

YES - Static variable in class edu.ucsb.nceas.morpho.framework.UIController
 

Z

ZIP - Static variable in class edu.ucsb.nceas.morpho.query.ExportCommand
Constant String to show state of delete
zoom_in() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 
zoom_out() - Method in class edu.ucsb.nceas.morpho.query.LiveMapPanel
 

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