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Workshop Description

This workshop is designed to provide data managers with hands-on experience with some of the new ecoinformatics tools being created under the Knowledge Network for Biocomplexity Project. Participants will learn how to use Morpho, Ecological Metadata Language (EML), and Metacat and apply these to managing ecological data at field and research stations across the country. Additionally participants will be asked to provide feedback on the software tools to guide further development.

Interest in the First KNB Data Management Tools Workshop was so strong that we've decided to hold this second workshop to reach a larger number of individuals in the community.

Venue

LTER Network Office
Building #83, UNM, Albuquerque, NM (see section H4 on the UNM map)
February 2-4, 2005

Audience

Data Managers

Workshop Objectives

Provide hands-on training and evaluation of data management technologies produced by the KNB project

Participant Objectives

By the end of the course, the participants will:

  • Demonstrate knowledge of Morpho, EML, and Metacat
  • Demonstrate ability to use Morpho, EML, and Metacat in archiving and discovering data.
  • Provide feedback and evaluation of Morpho, EML, and Metacat.

Format

A three day workshop consisting of presentations and hands-on demonstration for each ecoinformatic tool: Morpho, EML, and Metacat, including time for focus group discussions on the design, use, prospective implementation, and evaluation of each tool. (See Attached Agenda)

Preparation

Each participant should come to the workshop with at least three data sets in hand, either on a disk or accessible from the network, and with sufficient knowledge of those data to fully document them. This knowledge should include the number and content of the data tables, a detailed description of each variable (attribute) in each data table, and basic descriptive information about why, when, where, and how the data were collected. During the workshop these data sets will be used in both the Morpho and Metacat hands-on sessions. When you leave the workshop, participants will have fully documented these data using EML and stored them in the KNB Metacat using Morpho.

In addition, participants should read and understand the following materials before arriving at the workshop:

Prerequisites

A basic knowledge of data management practices is useful for the workshop but not required. The Metacat activity may involve some basic script writing but is not required.

How to participate

Interested people should fill out the registration form below completely. We will select between 20-30 participants depending on available funds. Participants that are selected will be reimbursed for airfare to the workshop and lodging and per diem costs during the workshop. We have limited space for the workshop, so please sign up early. Registration closed Dec 24, 2004.

Sponsors

This training workshop is sponsored by:

Knowledge Network for Biocomplexity
Science Environment for Ecological Knowledge

Agenda

Wednesday February 2

8:30-9:00 Welcome to the Workshop (Matt Jones)
User survey and consent form
 
9:00-9:45 Ecoinformatics (Deana Pennington) (slides)
9:45-10:00 EML and other metadata standards (Mark Servilla)  
10:00-10:30 Overview of EML (Mark Servilla) (slides)
10:30-10:45 Break  
10:45-11:00 Questions  
11:00-12:00 EML Modules and their use (Saurabh Garg) (slides)
12:00-1:15 Lunch  
1:15-1:45 EML Modules and their use (Saurabh Garg) (slides)
1:45-2:00 Questions  
2:00-3:00 LTER EML Best Practices (Mark Servilla) (slides)
3:00-3:30 Break  
3:30-5:00 Hands-on sessions using basic EML via XMLSpy (Mark Servilla) (slides)

Thursday February 3

8:30-9:00 Introduction to Morpho (Saurabh Garg) (slides)
9:00-10:00 Morpho features (Samantha Romanello) (slides)
10:00-10:30 Break  
10:30-11:30 Real-world use of Morpho (Saurabh Garg) (slides)
11:30-12:00 Discussion and Questions  
12:00-1:15 Lunch  
1:15-2:30 Hands on session with Morpho (Samantha Romanello) (slides)
2:30-3:00 Break  
3:00-4:00 Con't hands-on session with Morpho (Samantha Romanello)  
4:00-5:00 Facilitated group discussion on Morpho (Laura Downey)  

Friday February 4

8:30-9:00 Introduction to Metacat and EcoGrid (Matt Jones) (slides)
9:00-10:00 Deploying and using Metacat and EcoGrid (Matt Jones) (slides)
10:00-10:15 Break  
10:15-11:00 Replication and Harvesting (Duane Costa) (slides)
11:00-12:00 Hands-on session with Harvester (Duane Costa) (slides)
12:00-1:15 Lunch  
1:15-2:15 Hands-on session with Harvester (con't) (Duane Costa)  
2:15-3:00 Taking metadata (EML) to the next level - Kepler Demonstration (Deana Pennington) (slides)
3:00-3:15 Break  
3:15-4:15 Taking metadata (EML) to the next level - Kepler Demonstration (Deana Pennington) (slides)
4:15-5:00 Open Discussion - metadata strategies and concluding remarks (Matt Jones)  
Register

Sorry, registration is now closed. If you have further questions, please contact Matt Jones (jonesnceas.ucsb.edu). Thanks for your interest.