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Workshop Description

This workshop is designed to provide ecologists, biologists, and data managers hands-on experience with some of the new ecoinformatics tools being created under the Knowledge Network for Biocomplexity Project. Participants will learn how to use Morpho, Ecological Metadata Language (EML), and Metacat and apply these to managing ecological data at field and research stations across the country. Additionally participants will be asked to provide feedback on the software tools to guide further development.

Venue

National Center for Ecological Analysis and Synthesis (NCEAS), UCSB, Santa Barbara, CA.
September 28-30, 2004

Audience

Ecologists, Biologists, Data Managers

Workshop Objectives

Provide hands-on training and evaluation of data management technologies produced by the KNB project

Participant Objectives

By the end of the course, the participants will:

  • Demonstrate knowledge about Morpho, EML, and Metacat
  • Demonstrate ability to use Morpho, EML, and Metacat in archiving and discovering data.
  • Provide feedback and evaluation of Morpho, EML, and Metacat.

Format

A three day workshop consisting of presentations and hands-on demonstration for each ecoinformatic tool: Morpho, EML, and Metacat, including time for focus group discussions on the design, use, prospective implementation, and evaluation of each tool. (See Attached Agenda)

Preparation

Each participant should come to the workshop with at least three data sets in hand, either on a disk or accessible from the network, and with sufficient knowledge of those data to fully document them. This knowledge should include the number and content of the data tables, a detailed description of each variable (attribute) in each data table, and basic descriptive information about why, when, where, and how the data were collected. During the workshop these data sets will be used in both the Morpho and Metacat hands-on sessions. When you leave the workshop, participants will have fully documented these data using EML and stored them in the KNB Metacat using Morpho.

In addition, participants should read and understand the following materials before arriving at the workshop:

Prerequisites

A basic knowledge of data management practices is useful for the workshop but not required. The Metacat activity may involve some basic script writing in Perl, so a basic understanding of Perl would be useful as well, but is not required.

How to participate

Interested people should fill out the registration form below completely. We will select between 20-30 participants depending on available funds. Participants that are selected will be reimbursed for airfare to the workshop and lodging and per diem costs during the workshop.

Sponsors

This training workshop is sponsored by:

Knowledge Network for Biocomplexity
Science Environment for Ecological Knowledge

Agenda

Tuesday September 28th

8:30-9:00 Welcome to the Workshop (Matt Jones)  
9:00-9:30 Ecoinformatics (Matt Jones) (slides)
9:30-10:00 Introduction to Metadata (Mark Servilla) (slides)
10:00-10:30 Break  
10:30-10:45 EML and other metadata standards (Matt Jones) (slides)
10:45-11:00 The Biological Data Profile of the USGS CSDGM (Vivian Hutchinson) (slides)
11:00-12:00 Overview of EML (Chris Jones) (slides)
12:00-1:30 Lunch  
1:30-2:30 EML Modules and their use (Chris Jones) (slides)
2:30-3:00 Break  
3:00-4:30 Hands-on session using basic EML via Registry (Samantha Romanello) (slides)
4:30- 5:30 Facilitated group round-table discussion on EML (Samantha Romanello)  

Wednesday September 29th

8:30-9:00 Introduction to Morpho (Samantha Romanello) (slides)
9:00-10:00 Basic Morpho features (Importing and documenting data) (Samantha Romanello) (slides)
10:00-10:30 Break  
10:30-11:00 Morpho features: Tree Editor (Dan Higgins) (slides)
11:00-11:30 Morpho features: Saving to the network and access control (Saurabh Garg) (slides)
11:30-12:00 Morpho features: Searching for data (Chris Jones) (slides)
12:00-1:30 Lunch  
1:30-2:30 Hands on session with Morpho (Samantha Romanello) (slides)
2:30-3:00 Break  
3:00-4:30 Con't hands-on session with Morpho (Samantha Romanello)  
4:30-5:30 Facilitated group round-table discussion on Morpho (Samantha Romanello)  

Thursday September 30th

8:30-9:00 Introduction to Metacat (Matt Jones) (slides)
9:00-10:00 System Architecture (including XML and DOM, Basic Metacat Client API) (Matt Jones) (slides)
10:00-10:30 Break  
10:30-11:00 User interface customization (Saurabh Garg) (slides)
11:00-12:00 Replication and Harvesting (Duane Costa) (slides)
12:00-1:30 Lunch  
1:30-3:00 Hands-on session with Metacat (Matt Jones) (slides)
3:00-3:30 Break  
3:30-4:30 Facilitated group round-table discussion on Metacat (Samantha Romanello)  
4:30-5:00 Concluding remarks (Matt Jones)  
Register

Sorry, registration is now closed. If you have further questions, please contact Matt Jones (jonesnceas.ucsb.edu). Thanks for your interest.